| Significantly associated SNPs | Suggestively associated SNPs | ||||||
---|---|---|---|---|---|---|---|---|
Annotation | Estimated effect | Std. error | β-coefficient | P-value | Estimated effect | Std. error | β-coefficient | P-value |
Open Chromatin | 0.79 | 0.06 | 13.31 | 2.00 × 10-40 | 0.15 | 0.04 | 3.43 | 5.94 × 10-04 |
eQTLs | 0.72 | 0.07 | 10.7 | 1.01 × 10-26 | 0.39 | 0.08 | 5.06 | 4.10 × 10-07 |
DNase Clusters | 0.46 | 0.05 | 8.52 | 1.58 × 10-17 | NA | NA | NA | NA |
Heterochrom; low signal | −0.37 | 0.05 | −6.69 | 2.26 × 10-11 | NA | NA | NA | NA |
Exons | 0.58 | 0.09 | 6.52 | 6.94 × 10-11 | 0.17 | 0.07 | 2.35 | 1.85 × 10-02 |
Strong enhancer (A) | 0.47 | 0.08 | 5.98 | 2.29 × 10-09 | 0.21 | 0.1 | 2.12 | 3.37 × 10-02 |
Transcriptional elongation | −0.43 | 0.07 | −5.87 | 4.26 × 10-09 | NA | NA | NA | NA |
TSS 5 kb upstream | 0.36 | 0.07 | 5.53 | 3.26 × 10-08 | NA | NA | NA | NA |
vega Genes | 0.27 | 0.05 | 5.51 | 3.59 × 10-08 | 0.09 | 0.04 | 2.17 | 2.98 × 10-02 |
Polycomb repressed | 0.24 | 0.07 | 3.6 | 3.19 × 10-04 | 0.13 | 0.07 | 1.86 | 6.32 × 10-02 |
Gained Stops | 1.15 | 0.35 | 3.32 | 8.95 × 10-04 | 1.49 | 0.42 | 3.58 | 3.44 × 10-04 |
Syn. SNPs | −0.32 | 0.1 | −3.12 | 1.83 × 10-03 | NA | NA | NA | NA |
Non-Syn. SNPs | 0.23 | 0.09 | 2.56 | 1.06 × 10-02 | NA | NA | NA | NA |
Active promoter | −0.25 | 0.1 | −2.47 | 1.37 × 10-02 | NA | NA | NA | NA |
MCS44wayPrimates | 0.17 | 0.07 | 2.33 | 2.00 × 10-02 | NA | NA | NA | NA |
MCS44way | 0.24 | 0.11 | 2.31 | 2.07 × 10-02 | NA | NA | NA | NA |
5UTR | −0.31 | 0.16 | −2.01 | 4.50 × 10-02 | NA | NA | NA | NA |
Inactive/poised promoter | 0.37 | 0.2 | 1.87 | 6.14 × 10-02 | −0.59 | 0.41 | −1.43 | 1.54 × 10-01 |
MCS44wayPlacental | −0.2 | 0.11 | −1.8 | 7.14 × 10-02 | NA | NA | NA | NA |
Enhancers | 0.53 | 0.29 | 1.8 | 7.22 × 10-02 | NA | NA | NA | NA |
Insulator | −0.18 | 0.1 | −1.8 | 7.24 × 10-02 | NA | NA | NA | NA |
InDels | 0.11 | 0.06 | 1.76 | 7.79 × 10-02 | NA | NA | NA | NA |
tSmiRNA | 0.83 | 0.51 | 1.61 | 1.08 × 10-01 | −9.42 | 66.4 | −0.14 | 8.87 × 10-01 |
Weak/poised enhancer (B) | 0.1 | 0.06 | 1.52 | 1.28 × 10-01 | NA | NA | NA | NA |
Repetitive/CNV (B) | −1.41 | 1 | −1.41 | 1.58 × 10-01 | NA | NA | NA | NA |
Repetitive/CNV (A) | NA | NA | NA | NA | −0.9 | 0.71 | −1.27 | 2.05 × 10-01 |
RNA Genes | NA | NA | NA | NA | −0.73 | 0.58 | −1.26 | 2.08 × 10-01 |