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Table 4 Pseudo-r 2 values for logistic regressions for significantly and suggestively associated SNPs

From: The genomic signature of trait-associated variants

  Genotyping arrays only Genotyping arrays and annotations
  McFadden McKelvey & Zavoina’s McFadden McKelvey & Zavoina’s
Significant 1 (no TSS) 0.07 0.14 0.11 0.28
Significant 2 (with TSS) 0.07 0.14 0.12 0.42
Significant 2 (without TSS) 0.07 0.14 0.11 0.28
Suggestive 1 (no TSS) 0.09 0.16 0.09 0.18
Suggestive 2 (with TSS) 0.09 0.16 0.09 0.18
Suggestive 2 (without TSS) 0.09 0.16 0.09 0.18