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Table 3 Major MEME motifs in predicted cucumber CC-NBS family of proteins

From: Genome-wide analysis of NBS-encoding disease resistance genes in Cucumis sativusand phylogenetic study of NBS-encoding genes in Cucurbitaceae crops

Domain

Motif number nnunumber

Motif

Motif sequence*

Length

E-Value

CC

Motif10

C1

xxaVkxWvxkLxdxxYe/dad/eDLLDExsYExLRRxVxxxxx

39

3.0e-183

 

Motif20

C2

ntKqVRIFFSKSNQiaFrxK/rMxxkiKxi/vrEkLDaIxxe/dKtqfhLxxxxre

50

1.5e-090

 

Motif16

C3

xxxxxxxxETxSf/si/llexeViGRe/dxe/dv/kxxIvxxl/vlDxsxxe

40

1.7e-121

NBS

Motif01

P-loop

xxIxGmGGxGKItLAkxxxxx

21

1.5e-278

 

Motif06

RNBS-A-nonTIR

xFdxxiwVcVSxxFdxxxIlx

21

6.1e-201

 

Motif03

Kinase-2

gKkYf/lLVl/mDDVWNexxxlWxxLKxxLmxx

29

2.9e-255

 

Motif14

RNBS-B

xxGs/nxIlvTTRSxxvaxxxxt

21

7.4e-153

 

Motif11

RNBS-C

hxlxxLxxxxswxlFxxxaxx

21

1.1e-180

 

Motif08

GLPL

xexvxxxxGxPLaxxxxGxxl

21

2.9e-195

 

Motif02

RNBS-D-nonTIR

xxxxlKxCFxyCSxFPkDxxi/f

21

6.5e-234

 

Motif15

CNBS-1

xkxxLIxxWmAqGFiqxxxxx

21

1.2e-144

 

Motif09

CNBS-2

xmEdi/vGe/dxYFxeLlsRxl/fFqdxxxxxxxx

29

4.5e-195

 

Motif05

MHDV

xxKMHDlxh/rDxAxxixxxxxx

21

3.0e-213

LRR&C-terminal

Motif17

L1

lpxxixxLxhLryLdxsxx

19

8.7e-118

 

Motif04

L2

LPxxixxLxxLxxLxlxxCxxLxxlPxxx

29

1.1e-250

 

Motif07

L3

TLsxFvxGfxkGxki/lxELxxLxnLkGxLxlxxLexvx

37

4.6e-198

 

Motif13

L4

xxxxxDxxVLEGLqPHxNlxxlxIxxf/yxG

29

2.8e-171

 

Motif12

L5

pxxxFVENLVxIxLxxCxxcExLPmlgqL

29

6.6e-156

 

Motif18

L6

xxxxxxxxxxfxxLxxlxixxCxxLxxxp

29

3.8e-095

 

Motif19

L7

xxFPxLkxl/fxixxmxnLexWw

21

2.8e-108

  1. *If the bit value (Fig. S1A) of the amino acid at this position is less than 1, it is represented with an x; 2 < bits ≤ 1, with lowercase; 3 < bits ≤ 4, with capital letter; bits ≥ 3, with underlined capital letters.