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Table 3 Major MEME motifs in predicted cucumber CC-NBS family of proteins

From: Genome-wide analysis of NBS-encoding disease resistance genes in Cucumis sativusand phylogenetic study of NBS-encoding genes in Cucurbitaceae crops

Domain Motif number nnunumber Motif Motif sequence* Length E-Value
CC Motif10 C1 xxaVkxWvxkLxdxxYe/dad/eDLLDExsYExLRRxVxxxxx 39 3.0e-183
  Motif20 C2 ntKqVRIFFSKSNQiaFrxK/rMxxkiKxi/vrEkLDaIxxe/dKtqfhLxxxxre 50 1.5e-090
  Motif16 C3 xxxxxxxxETxSf/si/llexeViGRe/dxe/dv/kxxIvxxl/vlDxsxxe 40 1.7e-121
NBS Motif01 P-loop xxIxGmGGxGKItLAkxxxxx 21 1.5e-278
  Motif06 RNBS-A-nonTIR xFdxxiwVcVSxxFdxxxIlx 21 6.1e-201
  Motif03 Kinase-2 gKkYf/lLVl/mDDVWNexxxlWxxLKxxLmxx 29 2.9e-255
  Motif14 RNBS-B xxGs/nxIlvTTRSxxvaxxxxt 21 7.4e-153
  Motif11 RNBS-C hxlxxLxxxxswxlFxxxaxx 21 1.1e-180
  Motif08 GLPL xexvxxxxGxPLaxxxxGxxl 21 2.9e-195
  Motif02 RNBS-D-nonTIR xxxxlKxCFxyCSxFPkDxxi/f 21 6.5e-234
  Motif15 CNBS-1 xkxxLIxxWmAqGFiqxxxxx 21 1.2e-144
  Motif09 CNBS-2 xmEdi/vGe/dxYFxeLlsRxl/fFqdxxxxxxxx 29 4.5e-195
  Motif05 MHDV xxKMHDlxh/rDxAxxixxxxxx 21 3.0e-213
LRR&C-terminal Motif17 L1 lpxxixxLxhLryLdxsxx 19 8.7e-118
  Motif04 L2 LPxxixxLxxLxxLxlxxCxxLxxlPxxx 29 1.1e-250
  Motif07 L3 TLsxFvxGfxkGxki/lxELxxLxnLkGxLxlxxLexvx 37 4.6e-198
  Motif13 L4 xxxxxDxxVLEGLqPHxNlxxlxIxxf/yxG 29 2.8e-171
  Motif12 L5 pxxxFVENLVxIxLxxCxxcExLPmlgqL 29 6.6e-156
  Motif18 L6 xxxxxxxxxxfxxLxxlxixxCxxLxxxp 29 3.8e-095
  Motif19 L7 xxFPxLkxl/fxixxmxnLexWw 21 2.8e-108
  1. *If the bit value (Fig. S1A) of the amino acid at this position is less than 1, it is represented with an x; 2 < bits ≤ 1, with lowercase; 3 < bits ≤ 4, with capital letter; bits ≥ 3, with underlined capital letters.