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Table 4 Major MEME motifs in predicted cucumber TIR-NBS family of proteins

From: Genome-wide analysis of NBS-encoding disease resistance genes in Cucumis sativusand phylogenetic study of NBS-encoding genes in Cucurbitaceae crops

Domain Motif number motif Motif sequence* Length E-Value
TIR Motif03 T1 sxxxwxYDVFLSFRGeDTRxnFtxhLxxALrxxGi/vnvFi/rDx 41 1.1e-238
  Motif06 T2 CLxELVKIxxCkkxxxQxVLPv/iFYkv/iDPSxVRKQx 35 2.8e-187
  Motif13 T3 xxkvqxWRxAl/mtxa/vanlsGWxlxxxxxex 29 5.4e-095
  Motif18 T4 xIsxxLxkxIxxSxxsiVi/vfSexYAsSxW 29 4.7e-090
NBS Motif01 P-loop xGm/iGGIGKTTl/iAKalYnxixxxFexcCFL 29 3.6e-378
  Motif15 RNBS-A-TIR gLvxLQxxLLxxilx 15 1.5e-082
  Motif02 RNBS-B gxdWFGxGSr/kiIxTTRnxhLLxxxxf 26 2.4e-294
  Motif05 Kinase-2 iIr/kxRLxxKKvLiv/iLDDVDxxxQLxaLa/rG 29 1.8e-261
  Motif07 RNBS-C iLFLFSwHAFxxxhPsxxYld 21 4.7e-178
  Motif04 GLPL avxYckGLPLALxvLGSfLxx 21 7.1e-205
  Motif09 RNBS-D-TIR keIFIdIsCxFvGexxxxvxxxl 23 1.5e-138
  Motif16 TNBS-1 xlxxxixxxLxiSy/fdgLexxx 21 1.2e-087
  Motif08 MHDL Xxxxr/kxxMHdLIqxMGxxIvx 21 1.0e-160
LRR&C-terminal Motif19 L1 xxxkrsRLWlxxdxxxxlxxxxgxxxxxxix 31 4.1e-073
  Motif20 L2 S/pxxLRwxnWhGf/yPxxxLPxxfxmxxLxeLxLpxSxixxfw 40 3.9e-066
  Motif10 L3 LxxxPDl/fSxaxNLexLxLxxCxxLxxxHxSv/igsL 34 9.8e-178
  Motif14 L4 lxlxxcxnlxxlPSxLxLKSLxxLxlxxCxkxExxPxfxenMKSLxxlxl 50 7.7e-092
  Motif12 L5 xtxixxLxxSIxxLxxLxxLxlxxCxxLxxLPxxIxxLxsL 41 1.8e-144
  Motif17 L6 TxLxLxxCn/kIt/sNxdFLEtlxxvapsLxxLxLSxNxFc/sxLPS 41 4.6e-082
  Motif11 L7 l/ixxf/lxsLxxLlxnCxLxxIpklPxxlxxxxaxgx 36 3.3e-136
  1. *If the bit value (see Fig. S1B) of the amino acid at this position is less than 1, it is represented with x; 2 < bits ≤ 1, with lowercase; 3 < bits ≤ 4, with capital letter; bits ≥ 3, with underlined capital letters.