Figure 1From: Learning contextual gene set interaction networks of cancer with condition specificityThe schematic overview of learning contextual gene set interaction networks and identifying condition specificity. From the gene expression matrix, contextual gene sets are identified through the context-mining process. The expression values of genes in each contextual gene set for each sample are summarized into one major representative value, and a contextual gene set expression matrix is built as a result. Multiple Bayesian networks are learned from this matrix and their consensus network (undirected dependency likelihood matrix) is built while ignoring the direction of connections. For each condition, a subset of data is built by discarding the samples of the condition from the original data and a new dependency likelihood matrix is built from it. If the dependency likelihood of the interaction between G i and G j from all samples is significantly larger than the dependency likelihood from a data without a condition I, the interaction is specific to the condition I.Back to article page