From: Learning contextual gene set interaction networks of cancer with condition specificity
GO terms relevant only to cancer-generic | GO terms relevant only to tissue-centric | ||
---|---|---|---|
contextual gene sets | contextual gene sets | ||
GO term | Frequency | GO term | Frequency |
GO:0007166: cell surface receptor signal transduction | 11 | GO:0006163: purine nucleotide metabolism | 2 |
GO:0007049: cell cycle | 9 | GO:0006164: purine nucleotide biosynthesis | 2 |
GO:0006396: RNA processing | 7 | GO:0006629: lipid metabolism | 2 |
GO:0008283: cell proliferation | 7 | GO:0009150: purine ribonucleotide metabolism | 2 |
GO:0016070: RNA metabolism | 7 | GO:0009152: purine ribonucleotide biosynthesis | 2 |
GO:0043207: response to external biotic stimulus | 7 | GO:0009259: ribonucleotide metabolism | 2 |
GO:0000375: RNA splicing, via transesterification reactions | 6 | GO:0009260: ribonucleotide biosynthesis | 2 |
GO:0000377: RNA splicing, via transesterification reactions | 6 | GO:0044255: cellular lipid metabolism | 2 |
GO:0000398: nuclear mRNA splicing, via spliceosome | 6 | GO:0046148: pigment biosynthesis | 2 |
GO:0006397: mRNA processing | 6 | GO:0000904: cellular morphogenesis | 1 |
GO:0006959: humoral immune response | 6 | GO:0006099: tricarboxylic acid cycle | 1 |
GO:0008380: RNA splicing | 6 | GO:0006119: oxidative phosphorylation | 1 |
GO:0009613: response to pest, pathogen or parasite | 6 | GO:0006144: purine base metabolism | 1 |
GO:0016071: mRNA metabolism | 6 | GO:0006188 : IMP biosynthesis | 1 |
GO:0030333: antigen processing | 6 | GO:0006189: ’de novo’ IMP biosynthesis | 1 |
GO:0000067: DNA replication and chromosome cycle | 5 | GO:0006510: ATP-dependent proteolysis | 1 |
GO:0000075: cell cycle checkpoint | 5 | GO:0006554: lysine catabolism | 1 |
GO:0006950: response to stress | 5 | GO:0006570: tyrosine metabolism | 1 |
GO:0016064: humoral defense mechanism | 5 | GO:0006582: melanin metabolism | 1 |
GO:0000279: M phase | 4 | GO:0006583: melanin biosynthesis from tyrosine | 1 |