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Table 7 Comparison between contextual gene sets and MSigDB gene sets identified with GSEA

From: Learning contextual gene set interaction networks of cancer with condition specificity

  GBM-generic Classical Mesenchymal Neural Proneural Multi-type
Contextual gene set 144 6 8 4 14 71
GSEA N/A 1 245 6 3 N/A
  1. The number of gene sets are listed. For the contextual gene sets, GBM-generic or each subtype-centric contextual gene sets are shown. Multi-type indicates gene sets with various subtype-specific interactions.