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Table 7 Comparison between contextual gene sets and MSigDB gene sets identified with GSEA

From: Learning contextual gene set interaction networks of cancer with condition specificity

 

GBM-generic

Classical

Mesenchymal

Neural

Proneural

Multi-type

Contextual gene set

144

6

8

4

14

71

GSEA

N/A

1

245

6

3

N/A

  1. The number of gene sets are listed. For the contextual gene sets, GBM-generic or each subtype-centric contextual gene sets are shown. Multi-type indicates gene sets with various subtype-specific interactions.