TY - JOUR AU - Boore, J. L. PY - 1999 DA - 1999// TI - Animal mitochondrial genomes JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.8.1767 DO - 10.1093/nar/27.8.1767 ID - Boore1999 ER - TY - JOUR AU - Gissi, C. AU - Iannelli, F. AU - Pesole, G. PY - 2008 DA - 2008// TI - Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species JO - Heredity VL - 101 UR - https://doi.org/10.1038/hdy.2008.62 DO - 10.1038/hdy.2008.62 ID - Gissi2008 ER - TY - BOOK AU - Eades, D. AU - Otte, D. AU - Cigliano, M. AU - Braun, H. PY - 2013 DA - 2013// TI - Orthoptera Species File Online ID - Eades2013 ER - TY - JOUR AU - Sheffield, N. C. AU - Hiatt, K. D. AU - Valentine, M. C. AU - Song, H. AU - Whiting, M. F. PY - 2010 DA - 2010// TI - Mitochondrial genomics in Orthoptera using MOSAS JO - Mitochondr DNA VL - 21 UR - https://doi.org/10.3109/19401736.2010.500812 DO - 10.3109/19401736.2010.500812 ID - Sheffield2010 ER - TY - JOUR AU - Flook, P. AU - Rowell, H. AU - Gellissen, G. PY - 1995 DA - 1995// TI - Homoplastic rearrangements of insect mitochondrial tRNA genes JO - Naturwissenschaften VL - 82 UR - https://doi.org/10.1007/BF01131531 DO - 10.1007/BF01131531 ID - Flook1995 ER - TY - JOUR AU - Ye, W. AU - Dang, J. P. AU - Xie, L. D. AU - Huang, Y. PY - 2008 DA - 2008// TI - Complete mitochondrial genome of Teleogryllus emma (Orthoptera: Gryllidae) with a new gene order in Orthoptera JO - Zool Res VL - 29 UR - https://doi.org/10.3724/SP.J.1141.2008.00236 DO - 10.3724/SP.J.1141.2008.00236 ID - Ye2008 ER - TY - JOUR AU - Ma, C. AU - Yang, P. AU - Jiang, F. AU - Chapuis, M. P. AU - Shali, Y. AU - Sword, G. A. AU - Kang, L. PY - 2012 DA - 2012// TI - Mitochondrial genomes reveal the global phylogeography and dispersal routes of the migratory locust JO - Mol Ecol VL - 21 UR - https://doi.org/10.1111/j.1365-294X.2012.05684.x DO - 10.1111/j.1365-294X.2012.05684.x ID - Ma2012 ER - TY - JOUR AU - Saito, S. AU - Tamura, K. AU - Aotsuka, T. PY - 2005 DA - 2005// TI - Replication origin of mitochondrial DNA in insects JO - Genetics VL - 171 UR - https://doi.org/10.1534/genetics.105.046243 DO - 10.1534/genetics.105.046243 ID - Saito2005 ER - TY - JOUR AU - Zhang, D. X. AU - Hewitt, G. M. PY - 1997 DA - 1997// TI - Insect mitochondrial control region: A review of its structure, evolution and usefulness in evolutionary studies JO - Biochem Syst Ecol VL - 25 UR - https://doi.org/10.1016/S0305-1978(96)00042-7 DO - 10.1016/S0305-1978(96)00042-7 ID - Zhang1997 ER - TY - JOUR AU - Zhou, Z. AU - Huang, Y. AU - Shi, F. AU - Ye, H. PY - 2009 DA - 2009// TI - The complete mitochondrial genome of Deracantha onos (Orthoptera: Bradyporidae) JO - Mol Biol Rep VL - 36 UR - https://doi.org/10.1007/s11033-007-9145-8 DO - 10.1007/s11033-007-9145-8 ID - Zhou2009 ER - TY - JOUR AU - Fenn, J. D. AU - Cameron, S. L. AU - Whiting, M. F. PY - 2007 DA - 2007// TI - The complete mitochondrial genome sequence of the Mormon cricket (Anabrus simplex: Tettigoniidae: Orthoptera) and an analysis of control region variability JO - Insect Mol Biol VL - 16 UR - https://doi.org/10.1111/j.1365-2583.2006.00721.x DO - 10.1111/j.1365-2583.2006.00721.x ID - Fenn2007 ER - TY - JOUR AU - Tinkham, E. R. PY - 1945 DA - 1945// TI - Sinochlora, a new Tettigoniid genus from China with description of five new species (Orthoptera) JO - Trans Amer Entomol Soc VL - 70 ID - Tinkham1945 ER - TY - JOUR AU - Liu, C. X. AU - Kang, L. PY - 2007 DA - 2007// TI - Revision of the genus Sinochlora Tinkham (Orthoptera: Tettigoniidae, Phaneropterinae) JO - J Nat Hist VL - 41 UR - https://doi.org/10.1080/00222930701437667 DO - 10.1080/00222930701437667 ID - Liu2007 ER - TY - JOUR AU - Wang, G. AU - Lu, R. S. AU - Shi, F. M. PY - 2012 DA - 2012// TI - Remarks on the genus Sinochlora Tinkham (Orthoptera: Tettigoniidae, Phaneropterinae) JO - Zootaxa VL - 3526 ID - Wang2012 ER - TY - BOOK AU - Kimura, M. PY - 1983 DA - 1983// TI - The neutral theory of molecular evolution PB - Cambridge University Press CY - Cambridge UR - https://doi.org/10.1017/CBO9780511623486 DO - 10.1017/CBO9780511623486 ID - Kimura1983 ER - TY - JOUR AU - Bulmer, M. PY - 1991 DA - 1991// TI - The selection-mutation-drift theory of synonymous codon usage JO - Genetics VL - 129 ID - Bulmer1991 ER - TY - JOUR AU - Hassanin, A. AU - Leger, N. AU - Deutsch, J. PY - 2005 DA - 2005// TI - Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of Metazoa, and consequences for phylogenetic inferences JO - Syst Biol VL - 54 UR - https://doi.org/10.1080/10635150590947843 DO - 10.1080/10635150590947843 ID - Hassanin2005 ER - TY - JOUR AU - Clary, D. O. AU - Wolstenholme, D. R. PY - 1985 DA - 1985// TI - The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code JO - J Mol Evol VL - 22 UR - https://doi.org/10.1007/BF02099755 DO - 10.1007/BF02099755 ID - Clary1985 ER - TY - JOUR AU - Satta, Y. AU - Ishiwa, H. AU - Chigusa, S. I. PY - 1987 DA - 1987// TI - Analysis of nucleotide substitutions of mitochondrial DNAs in Drosophila melanogaster and its sibling species JO - Mol Biol Evol VL - 4 ID - Satta1987 ER - TY - JOUR AU - Stewart, J. B. AU - Beckenbach, A. T. PY - 2009 DA - 2009// TI - Characterization of mature mitochondrial transcripts in Drosophila, and the implications for the tRNA punctuation model in arthropods JO - Gene VL - 445 UR - https://doi.org/10.1016/j.gene.2009.06.006 DO - 10.1016/j.gene.2009.06.006 ID - Stewart2009 ER - TY - JOUR AU - Beard, C. B. AU - Mills Hamm, D. AU - Collins, F. H. PY - 1993 DA - 1993// TI - The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects JO - Insect Mol Biol VL - 2 UR - https://doi.org/10.1111/j.1365-2583.1993.tb00131.x DO - 10.1111/j.1365-2583.1993.tb00131.x ID - Beard1993 ER - TY - JOUR AU - Bae, J. S. AU - Kim, I. AU - Sohn, H. D. AU - Jin, B. R. PY - 2004 DA - 2004// TI - The mitochondrial genome of the firefly, Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects JO - Mol Phylogenet Evol VL - 32 UR - https://doi.org/10.1016/j.ympev.2004.03.009 DO - 10.1016/j.ympev.2004.03.009 ID - Bae2004 ER - TY - JOUR AU - Cameron, S. L. AU - Johnson, K. P. AU - Whiting, M. F. PY - 2007 DA - 2007// TI - The mitochondrial genome of the screamer louse Bothriometopus (Phthiraptera: Ischnocera): Effects of extensive gene rearrangements on the evolution of the genome JO - J Mol Evol VL - 65 UR - https://doi.org/10.1007/s00239-007-9042-8 DO - 10.1007/s00239-007-9042-8 ID - Cameron2007 ER - TY - JOUR AU - Ojala, D. AU - Montoya, J. AU - Attardi, G. PY - 1981 DA - 1981// TI - tRNA punctuation model of RNA processing in human mitochondria JO - Nature VL - 290 UR - https://doi.org/10.1038/290470a0 DO - 10.1038/290470a0 ID - Ojala1981 ER - TY - JOUR AU - Lessinger, A. C. AU - Junqueira, A. C. M. AU - Conte, F. F. AU - Espin, A. PY - 2004 DA - 2004// TI - Analysis of a conserved duplicated tRNA gene in the mitochondrial genome of blowflies JO - Gene VL - 339 UR - https://doi.org/10.1016/j.gene.2004.06.041 DO - 10.1016/j.gene.2004.06.041 ID - Lessinger2004 ER - TY - JOUR AU - Nelson, L. A. AU - Lambkin, C. L. AU - Batterham, P. AU - Wallman, J. F. AU - Dowton, M. AU - Whiting, M. F. AU - Yeates, D. K. AU - Cameron, S. L. PY - 2012 DA - 2012// TI - Beyond barcoding: A mitochondrial genomics approach to molecular phylogenetics and diagnostics of blowflies (Diptera: Calliphoridae) JO - Gene VL - 511 UR - https://doi.org/10.1016/j.gene.2012.09.103 DO - 10.1016/j.gene.2012.09.103 ID - Nelson2012 ER - TY - JOUR AU - Cameron, S. L. AU - Barker, S. C. AU - Whiting, M. F. PY - 2006 DA - 2006// TI - Mitochondrial genomics and the new insect order Mantophasmatodea JO - Mol Phylogenet Evol VL - 38 UR - https://doi.org/10.1016/j.ympev.2005.09.020 DO - 10.1016/j.ympev.2005.09.020 ID - Cameron2006 ER - TY - JOUR AU - Shao, R. F. AU - Barker, S. C. PY - 2003 DA - 2003// TI - The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: thysanoptera): Convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes JO - Mol Biol Evol VL - 20 UR - https://doi.org/10.1093/molbev/msg045 DO - 10.1093/molbev/msg045 ID - Shao2003 ER - TY - JOUR AU - Cameron, S. L. AU - Yoshizawa, K. AU - Mizukoshi, A. AU - Whiting, M. F. AU - Johnson, K. P. PY - 2011 DA - 2011// TI - Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera) JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-394 DO - 10.1186/1471-2164-12-394 ID - Cameron2011 ER - TY - JOUR AU - Nardi, F. AU - Carapelli, A. AU - Fanciulli, P. P. AU - Dallai, R. AU - Frati, F. PY - 2001 DA - 2001// TI - The complete mitochondrial DNA sequence of the basal Hexapod Tetrodontophora bielanensis: Evidence for heteroplasmy and tRNA translocations JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003914 DO - 10.1093/oxfordjournals.molbev.a003914 ID - Nardi2001 ER - TY - JOUR AU - Navajas, M. AU - Le Conte, Y. AU - Solignac, M. AU - Cros-Arteil, S. AU - Cornuet, J. M. PY - 2002 DA - 2002// TI - The complete sequence of the mitochondrial genome of the honeybee ectoparasite mite Varroa destructor (Acari: Mesostigmata) JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004055 DO - 10.1093/oxfordjournals.molbev.a004055 ID - Navajas2002 ER - TY - JOUR AU - Shao, R. F. AU - Barker, S. C. AU - Mitani, H. AU - Aoki, Y. AU - Fukunaga, M. PY - 2005 DA - 2005// TI - Evolution of duplicate control regions in the mitochondrial genomes of Metazoa: A case study with Australasian Ixodes ticks JO - Mol Biol Evol VL - 22 UR - https://doi.org/10.1093/molbev/msi047 DO - 10.1093/molbev/msi047 ID - Shao2005 ER - TY - JOUR AU - Fenn, J. D. AU - Song, H. AU - Cameron, S. L. AU - Whiting, M. F. PY - 2008 DA - 2008// TI - A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data JO - Mol Phylogenet Evol VL - 49 UR - https://doi.org/10.1016/j.ympev.2008.07.004 DO - 10.1016/j.ympev.2008.07.004 ID - Fenn2008 ER - TY - CHAP AU - Boore, J. L. ED - Sankoff, D. ED - Nadeau, J. PY - 2000 DA - 2000// TI - The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals BT - Comparative genomics, computational biology series PB - Dordrecht CY - Netherlands ID - Boore2000 ER - TY - JOUR AU - Levinson, G. AU - Gutman, G. A. PY - 1987 DA - 1987// TI - Slipped-strand mispairing: A major mechanism for DNA sequence evolution JO - Mol Biol Evol VL - 4 ID - Levinson1987 ER - TY - JOUR AU - Broughton, R. E. AU - Dowling, T. E. PY - 1994 DA - 1994// TI - Length variation in mitochondrial DNA of the minnow Cyprinella spiloptera JO - Genetics VL - 138 ID - Broughton1994 ER - TY - JOUR AU - Cameron, S. L. AU - Lo, N. AU - Bourguignon, T. AU - Svenson, G. J. AU - Evans, T. A. PY - 2012 DA - 2012// TI - A mitochondrial genome phylogeny of termites (Blattodea: Termitoidae): Robust support for interfamilial relationships and molecular synapomorphies define major clades JO - Mol Phylogenet Evol VL - 65 UR - https://doi.org/10.1016/j.ympev.2012.05.034 DO - 10.1016/j.ympev.2012.05.034 ID - Cameron2012 ER - TY - JOUR AU - Cameron, S. L. AU - Whiting, M. F. PY - 2007 DA - 2007// TI - Mitochondrial genomic comparisons of the subterranean termites from the Genus Reticulitermes (Insecta: Isoptera: Rhinotermitidae) JO - Genome VL - 50 UR - https://doi.org/10.1139/g06-148 DO - 10.1139/g06-148 ID - Cameron2007 ER - TY - JOUR AU - Cameron, S. L. AU - Whiting, M. F. PY - 2008 DA - 2008// TI - The complete mitochondrial genome of the tobacco hornworm, Manduca sexta, (Insecta: Lepidoptera: Sphingidae), and an examination of mitochondrial gene variability within butterflies and moths JO - Gene VL - 408 UR - https://doi.org/10.1016/j.gene.2007.10.023 DO - 10.1016/j.gene.2007.10.023 ID - Cameron2008 ER - TY - JOUR AU - Sheffield, N. C. AU - Song, H. AU - Cameron, L. AU - Whiting, M. F. PY - 2008 DA - 2008// TI - A comparative analysis of mitochondrial genomes in Coleoptera (Arthropoda: Insecta) and genome descriptions of six new beetles JO - Mol Biol Evol VL - 25 UR - https://doi.org/10.1093/molbev/msn198 DO - 10.1093/molbev/msn198 ID - Sheffield2008 ER - TY - JOUR AU - Roberti, M. AU - Bruni, F. AU - Polosa, P. L. AU - Gadaleta, M. N. AU - Cantatore, P. PY - 2006 DA - 2006// TI - The Drosophila termination factor DmTTF regulates in vivo mitochondrial transcription JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl181 DO - 10.1093/nar/gkl181 ID - Roberti2006 ER - TY - JOUR AU - Roberti, M. AU - Polosa, P. L. AU - Bruni, F. AU - Musicco, C. AU - Gadaleta, M. N. AU - Cantatore, P. PY - 2003 DA - 2003// TI - DmTTF, a novel mitochondrial transcription termination factor that recognises two sequences of Drosophila melanogaster mitochondrial DNA JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg272 DO - 10.1093/nar/gkg272 ID - Roberti2003 ER - TY - JOUR AU - Dowton, M. AU - Cameron, S. L. AU - Dowavic, J. I. AU - Austin, A. D. AU - Whiting, M. F. PY - 2009 DA - 2009// TI - Characterization of 67 mitochondrial tRNA gene rearrangements in the Hymenoptera suggests that mitochondrial tRNA gene position is selectively neutral JO - Mol Biol Evol VL - 26 UR - https://doi.org/10.1093/molbev/msp072 DO - 10.1093/molbev/msp072 ID - Dowton2009 ER - TY - JOUR AU - Macey, J. R. AU - Larson, A. AU - Ananjeva, N. B. AU - Fang, Z. L. AU - Papenfuss, T. J. PY - 1997 DA - 1997// TI - Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome JO - Mol Biol Evol VL - 14 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025706 DO - 10.1093/oxfordjournals.molbev.a025706 ID - Macey1997 ER - TY - JOUR AU - Lavrov, D. V. AU - Boore, J. L. AU - Brown, W. M. PY - 2002 DA - 2002// TI - Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: Duplication and nonrandom loss JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004068 DO - 10.1093/oxfordjournals.molbev.a004068 ID - Lavrov2002 ER - TY - JOUR AU - Hixson, J. E. AU - Wong, T. W. AU - Clayton, D. A. PY - 1986 DA - 1986// TI - Both the conserved stem-loop and divergent 5'-flanking sequences are required for initiation at the human mitochondrial origin of light-strand DNA replication JO - J Biol Chem VL - 261 ID - Hixson1986 ER - TY - JOUR AU - Sheffield, N. C. AU - Song, H. AU - Cameron, S. L. AU - Whiting, M. F. PY - 2009 DA - 2009// TI - Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics JO - Syst Biol VL - 58 UR - https://doi.org/10.1093/sysbio/syp037 DO - 10.1093/sysbio/syp037 ID - Sheffield2009 ER - TY - JOUR AU - Song, H. AU - Sheffield, N. C. AU - Cameron, S. L. AU - Miller, K. B. AU - Whiting, M. F. PY - 2010 DA - 2010// TI - When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics JO - Syst Entomol VL - 35 UR - https://doi.org/10.1111/j.1365-3113.2009.00517.x DO - 10.1111/j.1365-3113.2009.00517.x ID - Song2010 ER - TY - JOUR AU - Ma, C. AU - Liu, C. AU - Yang, P. AU - Kang, L. PY - 2009 DA - 2009// TI - The complete mitochondrial genomes of two band-winged grasshoppers, Gastrimargus marmoratus and Oedaleus asiaticus JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-156 DO - 10.1186/1471-2164-10-156 ID - Ma2009 ER - TY - JOUR AU - Benson, G. PY - 1999 DA - 1999// TI - Tandem repeats finder: a program to analyze DNA sequences JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.2.573 DO - 10.1093/nar/27.2.573 ID - Benson1999 ER - TY - JOUR AU - Lowe, T. M. AU - Eddy, S. R. PY - 1997 DA - 1997// TI - tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.5.0955 DO - 10.1093/nar/25.5.0955 ID - Lowe1997 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - JOUR AU - Feijao, P. C. AU - Neiva, L. S. AU - de Azeredo-Espin, A. M. L. AU - Lessinger, A. C. PY - 2006 DA - 2006// TI - AMiGA: the arthropodan mitochondrial genomes accessible database JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl021 DO - 10.1093/bioinformatics/btl021 ID - Feijao2006 ER - TY - JOUR AU - Lobry, J. R. PY - 1995 DA - 1995// TI - Properties of a general model of DNA evolution under no-strand-bias conditions JO - J Mol Evol VL - 40 UR - https://doi.org/10.1007/BF00163237 DO - 10.1007/BF00163237 ID - Lobry1995 ER - TY - JOUR AU - Stothard, P. PY - 2000 DA - 2000// TI - The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences JO - Biotechniques VL - 28 ID - Stothard2000 ER - TY - JOUR AU - Zuker, M. PY - 2003 DA - 2003// TI - Mfold web server for nucleic acid folding and hybridization prediction JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg595 DO - 10.1093/nar/gkg595 ID - Zuker2003 ER - TY - JOUR AU - Tamura, K. AU - Peterson, D. AU - Peterson, N. AU - Stecher, G. AU - Nei, M. AU - Kumar, S. PY - 2011 DA - 2011// TI - MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr121 DO - 10.1093/molbev/msr121 ID - Tamura2011 ER - TY - CHAP AU - Jukes, T. H. AU - Cantor, C. R. ED - Munro, H. PY - 1969 DA - 1969// TI - Evolution of protein molecules BT - Mammalian protein metabolism PB - Academic Press CY - New York UR - https://doi.org/10.1016/B978-1-4832-3211-9.50009-7 DO - 10.1016/B978-1-4832-3211-9.50009-7 ID - Jukes1969 ER - TY - JOUR AU - Robinson, M. AU - Gouy, M. AU - Gautier, C. AU - Mouchiroud, D. PY - 1998 DA - 1998// TI - Sensitivity of the relative-rate test to taxonomic sampling JO - Mol Biol Evol VL - 15 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026016 DO - 10.1093/oxfordjournals.molbev.a026016 ID - Robinson1998 ER - TY - JOUR AU - Robinson-Rechavi, M. AU - Huchon, D. PY - 2000 DA - 2000// TI - RRTree: Relative-Rate Tests between groups of sequences on a phylogenetic tree JO - Bioinformatics VL - 16 UR - https://doi.org/10.1093/bioinformatics/16.3.296 DO - 10.1093/bioinformatics/16.3.296 ID - Robinson-Rechavi2000 ER -