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Table 1 List of overprinted genes detected via a phylostratigraphic approach based on annotated ORFs in Ensembl

From: Phylogenetic patterns of emergence of new genes support a model of frequent de novoevolution

ENSMUS IDs Phylostratum Comment
Gene Newer protein Older protein Gene name Overprint Original  
G00000029642 P00000106186 P00000058355 Polr1d 5 2 Same start as main gene, but acquired additional exons
G00000030970 P00000127123 P00000033269 Ctbp2 12 1 Same start as main gene, but acquired an additional internal exon
G00000035504 P00000100994 P00000100995 Reep6 17 2 New initiation codon creates second reading frame
G00000089756 P00000104646 P00000104577 Gm8898 18 2 Same start, but new splice variant; paralog of Gm4723
G00000078898 P00000104676 P00000104675 Gm4723 18 2 Same start, but new splice variant; paralog of Gm8898
G00000038227 P00000133896 P00000046939 Hoxa9 18 2 New starting exon initiates a separate reading frame
G00000067786 P00000134415 P00000085836 Nnat 18 16 Same start, alternative splicing leads to new reading frames
G00000044405 P00000105110 P00000051732 Adig 20 16 Same start as main gene, but acquired an additional internal exon
G00000025144 P00000101761 P00000026137 Stra13 20 2 Gain of alternative second exon induces a shift from the older frame
G00000033720 P00000109417 P00000041872 Sfxn5 20 2 Alternative first exon and last exons, common second exon
G00000063235 P00000107087 P00000077036 Ptpmt1 20 1 Alternative transcription start site and start codon
G00000044303 P00000030237 P00000061847 Cdkn2aa 16 1 New starting exon initiates a separate reading frame. Also known as Arf, Pctr1, MTS1, Ink4a
G00000027523 P00000104716 P00000085184 Gnasb 18 2 New initiation codon creates second reading frame. Also known as Nesp, GPSA
  1. ahas previously been described, see [32, 33].
  2. bhas previously been described, see [30, 31, 33].