Table 2 Transposable elements on the Fol4287 pathogenicity chromosome

Class I (retrotransposon)

237

237

58

LTR

Gypsy/Ty3

24

MAGGY-like retrotransposon (3 types)

16

4

Skippy

8

1

Copia/Ty1

55

NHT2-like retrotransposon (5 types)

51

1

Pcretro3-like retrotransposon

4

1

unclassified

20

Yaret2

20

6

solo-LTR

28

Yaret2 solo-LTR

12

12

Gollum (NHT2-like retrotransposon type 3 LTR)

16

10

LINE

68

MGR583-like LINE element

31

3

Yaret1

25

3

Yaret1-like

12

0

SINE

32

Foxy

32

10

unrelated

10

Marsu

10

7

Class II (DNA transposons) - Subclass 1

208

208

108

Crypton

1

FoCrypton

1

1

TIR

Tc1/mariner

Pogo

41

Fot2

2

2

Fot3

7

2

Fot4

1

0

Fot5

23

6

Fot6

6

3

Fot8

2

0

Tc1

3

Impala

3

0

hAT

70

Folyt1

3

3

Folyt2

1

0

Frodo

5

3

Hornet

16

7

Drifter

1

1

NhORF4-like

2

1

Sam

1

1

YahAT1

6

5

YahAT2

9

4

YahAT3

3

1

YahAT4

2

1

YahAT5

4

2

YahAT6

7

3

YahAT7

10

1

Mutator

20

Hop

1

0

Hop3

6

4

Hop4

5

0

Hop5

2

1

Hop6

6

0

MITE

73

mimp (unclassified)

2

2

mimp1

24

16

mimp2

7

6

mimp3

6

5

mimp4

17

16

mFot5

14

11

Gimli

3

0

Class II (DNA transposons) - Subclass 2

9

Helitron

9

8

Class II (DNA transposons) - unclassified

40

unclassified

40

2

total number of TEs

494

494

176