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Table 4 Novel effector candidates identified by searching for genes with a mimp IR in their promoter

From: MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum

Gene description

Mimp in promoter1

SP2

Protein in xylem sap

Encoded protein

Chromosome

FOXG or genomic location

Identified in search

Distance mimp IR-ATG [bp]

  

SIX genes

      

Six1 (corrected)

14

FOXG_16418 (incorrect)

no3

1192

yes

yes

Six2

14

FOXG_16416

yes

211

yes

yes

Six3

14

FOXG_16398

yes

232

yes

yes

Six5

14

SC36[3273-3407]

no4

1132

yes

yes

Six6

14

FOXG_14246

yes

668

yes

yes

Six7

14

SC51[65216-65875]

no

(sequence gap)

yes

yes

Novel effector candidates

      

Six8

14, 14

FOXG_17445, FOXG_16464

no4

109

yes

yes

Six8b

3, 3, 6, 6

SC18[1122404-122824],SC18[862700-863120], SC41 [221648-222068], SC21[219855-220275]

yes

1026, 1972

yes

no

Six9

14

FOXG_14223

yes

249

yes

yes

Six10

14

FOXG_17457

no4

384

yes

yes

Six11

14

SC22[806692-807024]

yes

322, 852

yes

yes

Six12

14

SC51[62415-62753]

no5

837

no

yes

Six13

6, 6

FOXG_17131 (5' extended), SC42[126863-127192]

yes

1971

yes

yes

Six14

14

SC36[135867-136180]

yes

211, 258, 681, 1215

yes

yes

FoAve1

14

SC36[201730-202101]

yes

788

yes

no

conserved secreted protein

14

FOXG_14254

yes

1312

yes

no

secreted protein

15

SC38[202206-202388]

yes

1717

yes

no

secreted protein

14

SC51[127492-128836]

yes

1236

yes

no

Secreted enzymes

      

Orx1

14

FOXG_14258;FOXG_14236

yes

554

yes

yes

catalase-peroxidase

6, 14

FOXG_17130, FOXG_17460

yes

921

yes

yes

metalloprotease

3, 6

SC47[78991-79260], SC42[41025-41294]

yes

394

yes

no

  1. 1 distance between the mimp IR and the ATG start codon.
  2. 2 predicted signal peptide.
  3. 3 not identified because of a sequence gap in the genome assembly.
  4. 4 not identified because of a short first exon.
  5. 5 not identified due to absence of a signal peptide.