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Table 3 Distribution of the SNPs from the 1536 set and from the GoldenGate validated set over the linkage groups in the integrated map

From: High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL

  

1536 set

 

Validated in GoldenGate assay

LG

Length

Number of SNPs

Mean distance between two SNPs

Number of gaps >10 cM

Number of SNPs

Mean distance between two SNPs

Number of gaps >10 cM

A1

120.1

96

1.15

1

59

1.52

1

A2

117.9

82

1.10

1

72

1.40

1

A3

137.5

123

1.08

 

75

1.75

 

A4

67.4

85

0.74

 

63

0.97

 

A5

106.4

114

0.89

1

79

1.29

1

A6

137.1

98

1.26

1

74

1.68

3

A7

109.7

110

0.80

 

85

1.04

 

A8

102.1

43

2.00

2

38

2.27

2

A9

133.2

71

1.78

1

48

2.60

3

A10

65.7

76

0.83

 

58

1.06

 

C1

104.5

67

1.53

1

49

2.10

2

C2

126.5

56

2.08

1

33

3.49

2

C3

183.5

124

1.27

 

94

1.68

3

C4

132.9

82

1.53

2

63

2.00

2

C5

144.7

27

4.50

5

21

5.40

5

C6

111.2

73

1.14

1

59

1.27

1

C7

103.3

64

1.30

1

44

1.91

1

C8

119

47

1.97

1

33

2.78

1

C9

128.3

59

2.06

3

41

2.98

4

Total

2250.9

1507

1.32

2

1088

1.79

32