High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL

BMC Genomics

Table 6 Genetic distance (d) and effective size (Ne) at which r ² fell below 0.2 estimated for each linkage group and globally for A, C and whole genomes on the whole, SOSR, WOSR and “00” WOSR collections

	Whole collection		SOSR collection		WOSR collection		“00” WOSR collection
	d	Ne	d	Ne	d	Ne	d	Ne
Whole genome	0.6	161	0.7	138	0.7	137	1.2	82
A genome	0.6	165	0.6	165	0.7	139	1.2	82
C genome	0.6	161	1.2	80	0.7	137	1.2	82
A1	0.8	124	0.9	106	0.6	159	1.0	95
A2	0.8	113	0.6	151	1.4	69	2.1	47
A3	0.7	127	0.7	126	0.5	169	0.8	115
A4	0.3	284	0.3	257	0.4	231	0.7	128
A5	0.4	239	0.5	195	0.8	121	1.2	83
A6	0.4	224	0.5	199	1.1	87	2.3	42
A7	0.3	227	0.4	249	0.4	220	1.0	98
A8	0.9	103	0.8	116	1.9	51	2.8	34
A9	1.6	61	1.7	57	0.8	109	1.1	85
A10	0.4	212	0.2	360	0.4	227	0.7	140
C1	0.7	139	1.0	94	0.7	130	1.0	98
C2	1.7	58	2.6	37	0.9	108	1.3	72
C3	0.5	262	0.9	106	0.3	275	0.4	211
C4	0.3	262	0.9	106	0.3	275	0.4	211
C5	0.4	210	0.6	143	1.3	74	2.5	60
C6	0.4	210	0.6	143	1.3	74	2.5	40
C7	0.4	207	0.8	115	0.7	128	1.4	67
C8	0.4	214	0.9	104	0.5	189	0.7	137
C9	1.0	92	3.4	29	0.7	131	1.0	91

ISSN: 1471-2164