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Table 2 Probability table of transcription factor binding sites in training and control data sets

From: Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers

Sr. No TFs P(TF i ) in training data set X ¯ 159 × 14 P(TF i ) in control data set Y ¯ 100 × 14
1 Tal1b-E47S 54/159=0.34 6/100=0.06
2 NF-kappaβ 29/159=0.18 10/100=0.10
3 n-MYC 74/159=0.46 7/100=0.07
4 ARNT 61/159=0.38 17/100=0.17
5 USF 61/159=0.38 7/100=0.07
6 c-REL 58/159=0.36 20/100=0.20
7 MEF 55/159=0.35 10/100=0.10
8 FREAC 94/159=0.59* 14/100=0.14
9 AML-1 94/159=0.59* 25/100=0.25
10 c-FOS 119/159=0.74* 23/100=0.23
11 HNF-3beta 119/159=0.74* 31/100=0.31
12 SOX17 136/159=0.85* 44/100=0.44
13 HFH 150/159=0.94* 51/100=0.51*
14 SOX-5 151/159=0.95* 44/100=0.44
  1. * TFs with P(TF i ) greater than 0.50 defined as group-2. The table present Sr. No 8 to 14 in Training data set as the only group of TFs with high probability of TFs so the most likely co-occurring TFs in CNS brain specific enhancers compared to TFs with P(TF i ) less than 0.5 in training and control data sets.