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Table 2 KEGG pathway and Gene ontology enrichment

From: Massive screening of copy number population-scale variation in Bos taurusgenome

Category Term Count Fold Enrichment PValue Benjamini  
GOTERM_CC_FAT GO:0022627~cytosolic small ribosomal subunit 11 3.43 0.0002 0.0140  
GOTERM_CC_FAT GO:0022626~cytosolic ribosome 11 3.20 0.0004 0.0222  
GOTERM_CC_FAT GO:0015935~small ribosomal subunit 15 2.43 0.0010 0.0401  
GOTERM_CC_FAT GO:0033279~ribosomal subunit 24 2.06 0.0004 0.0247  
GOTERM_CC_FAT GO:0044448~cell cortex part 22 2.00 0.0010 0.0408  
GOTERM_CC_FAT GO:0005874~microtubule 38 1.66 0.0009 0.0423  
GOTERM_CC_FAT GO:0005840~ribosome 67 1.45 0.0008 0.0389  
GOTERM_CC_FAT GO:0005829~cytosol 87 1.36 0.0011 0.0403  
GOTERM_CC_FAT GO:0044429~mitochondrial part 118 1.35 0.0002 0.0158  
GOTERM_CC_FAT GO:0030529~ribonucleoprotein complex 106 1.33 0.0008 0.0417  
GOTERM_CC_FAT GO:0005739~mitochondrion 219 1.31 0.0000 0.0014  
GOTERM_CC_FAT GO:0043233~organelle lumen 173 1.30 0.0000 0.0065  
GOTERM_CC_FAT GO:0031974~membrane-enclosed lumen 180 1.30 0.0000 0.0094  
GOTERM_CC_FAT GO:0070013~intracellular organelle lumen 172 1.30 0.0001 0.0070  
GOTERM_CC_FAT GO:0031981~nuclear lumen 125 1.28 0.0012 0.0421  
GOTERM_CC_FAT GO:0043228~non-membrane-bounded organelle 316 1.20 0.0000 0.0081  
GOTERM_CC_FAT GO:0043232~intracellular non-membrane-bounded organelle 316 1.20 0.0000 0.0081  
KEGG_PATHWAY bta03010:Ribosome 41 2.00 0.0000 0.0005  
KEGG_PATHWAY bta00190:Oxidative phosphorylation 52 1.64 0.0001 0.0097  
Category enrichment for Italian Simmental       
Category Term Count Fold Enrichment PValue Benjamini Genes
GOTERM_CC_FAT GO:0005576~extracellular region 10 6.51 0.0000 0.0000 LOC751562; PRP1,3,6,9; LOC751563; CSH2; PRP-VII; PRL
GOTERM_MF_FAT GO:0005179~hormone activity 10 82.73 0.0000 0.0000 LOC751562; PRP1,3,6,9; LOC751563; CSH2; PRP-VII; PRL
INTERPRO IPR001400:Somatotropin hormone 10 509.50 0.0000 0.0000 LOC751562; PRP1,3,6,9; LOC751563; CSH2; PRP-VII; PRL
INTERPRO IPR018116:Somatotropin hormone, conserved site 9 429.89 0.0000 0.0000 LOC751562; PRP1,3,9; LOC751563; CSH2; PRP-VII; PRL
INTERPRO IPR012351:Four-helical cytokine, core 7 172.57 0.0000 0.0000 LOC751562; PRP1,3,4,6; CSH2; PRL
PIR_SUPERFAMILY PIRSF001825:prolactin/lactogen/growth hormone 7 302.56 0.0000 0.0000 LOC751562; PRP1,3,4,6; CSH2; PRL
SP_PIR_KEYWORDS hormone 10 106.05 0.0000 0.0000 LOC751562; PRP1,3,6,9; LOC751563; CSH2; PRP-VII; PRL
SP_PIR_KEYWORDS Secreted 5 5.73 0.0056 0.0258 CSH2; PRP1,3,4; PRL
SP_PIR_KEYWORDS signal 6 4.18 0.0054 0.0370 PRP1,3,4,6; CSH2; PRL
UP_SEQ_FEATURE disulfide bond 5 5.27 0.0040 0.0258 CSH2, PRP1, PRP4, PRL, PRP3
UP_SEQ_FEATURE signal peptide 6 5.03 0.0007 0.0095 PRP1,3,4,6; CSH2; PRL
  1. KEGG pathway and Gene ontology (GO) categories significantly over represented, with false discovery rate (Benjamini) and gene lists (Ensemble gene ID).