Skip to main content

Table 2 KEGG pathway and Gene ontology enrichment

From: Massive screening of copy number population-scale variation in Bos taurusgenome

Category

Term

Count

Fold Enrichment

PValue

Benjamini

 

GOTERM_CC_FAT

GO:0022627~cytosolic small ribosomal subunit

11

3.43

0.0002

0.0140

 

GOTERM_CC_FAT

GO:0022626~cytosolic ribosome

11

3.20

0.0004

0.0222

 

GOTERM_CC_FAT

GO:0015935~small ribosomal subunit

15

2.43

0.0010

0.0401

 

GOTERM_CC_FAT

GO:0033279~ribosomal subunit

24

2.06

0.0004

0.0247

 

GOTERM_CC_FAT

GO:0044448~cell cortex part

22

2.00

0.0010

0.0408

 

GOTERM_CC_FAT

GO:0005874~microtubule

38

1.66

0.0009

0.0423

 

GOTERM_CC_FAT

GO:0005840~ribosome

67

1.45

0.0008

0.0389

 

GOTERM_CC_FAT

GO:0005829~cytosol

87

1.36

0.0011

0.0403

 

GOTERM_CC_FAT

GO:0044429~mitochondrial part

118

1.35

0.0002

0.0158

 

GOTERM_CC_FAT

GO:0030529~ribonucleoprotein complex

106

1.33

0.0008

0.0417

 

GOTERM_CC_FAT

GO:0005739~mitochondrion

219

1.31

0.0000

0.0014

 

GOTERM_CC_FAT

GO:0043233~organelle lumen

173

1.30

0.0000

0.0065

 

GOTERM_CC_FAT

GO:0031974~membrane-enclosed lumen

180

1.30

0.0000

0.0094

 

GOTERM_CC_FAT

GO:0070013~intracellular organelle lumen

172

1.30

0.0001

0.0070

 

GOTERM_CC_FAT

GO:0031981~nuclear lumen

125

1.28

0.0012

0.0421

 

GOTERM_CC_FAT

GO:0043228~non-membrane-bounded organelle

316

1.20

0.0000

0.0081

 

GOTERM_CC_FAT

GO:0043232~intracellular non-membrane-bounded organelle

316

1.20

0.0000

0.0081

 

KEGG_PATHWAY

bta03010:Ribosome

41

2.00

0.0000

0.0005

 

KEGG_PATHWAY

bta00190:Oxidative phosphorylation

52

1.64

0.0001

0.0097

 

Category enrichment for Italian Simmental

      

Category

Term

Count

Fold Enrichment

PValue

Benjamini

Genes

GOTERM_CC_FAT

GO:0005576~extracellular region

10

6.51

0.0000

0.0000

LOC751562; PRP1,3,6,9; LOC751563; CSH2; PRP-VII; PRL

GOTERM_MF_FAT

GO:0005179~hormone activity

10

82.73

0.0000

0.0000

LOC751562; PRP1,3,6,9; LOC751563; CSH2; PRP-VII; PRL

INTERPRO

IPR001400:Somatotropin hormone

10

509.50

0.0000

0.0000

LOC751562; PRP1,3,6,9; LOC751563; CSH2; PRP-VII; PRL

INTERPRO

IPR018116:Somatotropin hormone, conserved site

9

429.89

0.0000

0.0000

LOC751562; PRP1,3,9; LOC751563; CSH2; PRP-VII; PRL

INTERPRO

IPR012351:Four-helical cytokine, core

7

172.57

0.0000

0.0000

LOC751562; PRP1,3,4,6; CSH2; PRL

PIR_SUPERFAMILY

PIRSF001825:prolactin/lactogen/growth hormone

7

302.56

0.0000

0.0000

LOC751562; PRP1,3,4,6; CSH2; PRL

SP_PIR_KEYWORDS

hormone

10

106.05

0.0000

0.0000

LOC751562; PRP1,3,6,9; LOC751563; CSH2; PRP-VII; PRL

SP_PIR_KEYWORDS

Secreted

5

5.73

0.0056

0.0258

CSH2; PRP1,3,4; PRL

SP_PIR_KEYWORDS

signal

6

4.18

0.0054

0.0370

PRP1,3,4,6; CSH2; PRL

UP_SEQ_FEATURE

disulfide bond

5

5.27

0.0040

0.0258

CSH2, PRP1, PRP4, PRL, PRP3

UP_SEQ_FEATURE

signal peptide

6

5.03

0.0007

0.0095

PRP1,3,4,6; CSH2; PRL

  1. KEGG pathway and Gene ontology (GO) categories significantly over represented, with false discovery rate (Benjamini) and gene lists (Ensemble gene ID).
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us