From: Massive screening of copy number population-scale variation in Bos taurusgenome
Breed | No. samples | CNV counts | CNV unique | CNV specific | Gain | Loss | CNVR count | Protein coding genes | Total length (Mb) | Mean length (kb) | Median (kb) | Min length (kb) | Max length (kb) | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Italian Friesian | 891 | 1522 | 1.71 | 1179 | 1.32 | 1151 | 1.29 | 419 | 0.47 | 1146 | 1.29 | 169 | 0.19 | 3056 | 3.43 | 323.84 | 8.04 | 5.79 | 0.23 | 49.57 |
Italian Brown | 705 | 4198 | 5.95 | 2923 | 4.15 | 316 | 0.45 | 1034 | 1.47 | 3164 | 4.49 | 211 | 0.30 | 4310 | 6.11 | 441.94 | 8.45 | 6.25 | 0.48 | 49.63 |
Italian Simmental | 482 | 578 | 1.20 | 427 | 0.89 | 316 | 0.66 | 289 | 0.60 | 292 | 0.61 | 74 | 0.15 | 1094 | 2.27 | 108.36 | 6.30 | 4.65 | 0.49 | 43.74 |
Piedmontese | 369 | 543 | 1.47 | 427 | 1.16 | 366 | 0.99 | 192 | 0.52 | 351 | 0.95 | 81 | 0.22 | 1295 | 3.51 | 95.75 | 7.29 | 6.01 | 0.61 | 46.30 |
Marchigiana | 207 | 591 | 2.86 | 459 | 2.22 | 329 | 1.59 | 202 | 0.98 | 389 | 1.88 | 88 | 0.43 | 1964 | 9.49 | 140.23 | 7.86 | 7.86 | 0.25 | 44.74 |
No Samples | Marchigiana % | Piedmontese % | Italian Simmental % | Italian Friesian % | Italian Brown % | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1 | 91.07 | 88.76 | 84.31 | 87.56 | 81.66 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
2 | 5.88 | 7.73 | 10.07 | 7.83 | 10.71 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
3 | 1.53 | 1.17 | 2.34 | 2.39 | 3.59 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
4-5 | 0.65 | 0.94 | 1.41 | 0.82 | 2.26 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
6-10 | 0.65 | 0.70 | 1.17 | 0.82 | 1.09 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
10-25 | 0.00 | 0.70 | 0.70 | 0.58 | 0.58 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
>25 | 0.22 | 0.00 | 0.00 | 0.00 | 0.10 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
No Samples | Marchigiana | Piedmontese | Italian Simmental | Italian Friesian | Italian Brown | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1 | 418 | 379 | 360 | 1063 | 2387 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
2 | 27 | 33 | 43 | 95 | 313 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
3 | 7 | 5 | 10 | 29 | 105 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
4-5 | 3 | 4 | 6 | 10 | 66 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
6-10 | 3 | 3 | 5 | 10 | 32 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
10-25 | 0 | 3 | 3 | 7 | 17 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
>25 | 1 | 0 | 0 | 0 | 3 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |