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Table 3 CNV events by Bos taurus breeds

From: Massive screening of copy number population-scale variation in Bos taurusgenome

Breed No. samples CNV counts CNV unique CNV specific Gain Loss CNVR count Protein coding genes Total length (Mb) Mean length (kb) Median (kb) Min length (kb) Max length (kb)
Italian Friesian 891 1522 1.71 1179 1.32 1151 1.29 419 0.47 1146 1.29 169 0.19 3056 3.43 323.84 8.04 5.79 0.23 49.57
Italian Brown 705 4198 5.95 2923 4.15 316 0.45 1034 1.47 3164 4.49 211 0.30 4310 6.11 441.94 8.45 6.25 0.48 49.63
Italian Simmental 482 578 1.20 427 0.89 316 0.66 289 0.60 292 0.61 74 0.15 1094 2.27 108.36 6.30 4.65 0.49 43.74
Piedmontese 369 543 1.47 427 1.16 366 0.99 192 0.52 351 0.95 81 0.22 1295 3.51 95.75 7.29 6.01 0.61 46.30
Marchigiana 207 591 2.86 459 2.22 329 1.59 202 0.98 389 1.88 88 0.43 1964 9.49 140.23 7.86 7.86 0.25 44.74
No Samples Marchigiana % Piedmontese % Italian Simmental % Italian Friesian % Italian Brown %                
1 91.07 88.76 84.31 87.56 81.66                
2 5.88 7.73 10.07 7.83 10.71                
3 1.53 1.17 2.34 2.39 3.59                
4-5 0.65 0.94 1.41 0.82 2.26                
6-10 0.65 0.70 1.17 0.82 1.09                
10-25 0.00 0.70 0.70 0.58 0.58                
>25 0.22 0.00 0.00 0.00 0.10                
No Samples Marchigiana Piedmontese Italian Simmental Italian Friesian Italian Brown                
1 418 379 360 1063 2387                
2 27 33 43 95 313                
3 7 5 10 29 105                
4-5 3 4 6 10 66                
6-10 3 3 5 10 32                
10-25 0 3 3 7 17                
>25 1 0 0 0 3                
  1. Summary of the identified copy-number variants in each of the five Bos taurus breeds. Numbers in italics are normalized by sample counts.