Skip to main content

Table 3 CNV events by Bos taurus breeds

From: Massive screening of copy number population-scale variation in Bos taurusgenome

Breed

No. samples

CNV counts

CNV unique

CNV specific

Gain

Loss

CNVR count

Protein coding genes

Total length (Mb)

Mean length (kb)

Median (kb)

Min length (kb)

Max length (kb)

Italian Friesian

891

1522

1.71

1179

1.32

1151

1.29

419

0.47

1146

1.29

169

0.19

3056

3.43

323.84

8.04

5.79

0.23

49.57

Italian Brown

705

4198

5.95

2923

4.15

316

0.45

1034

1.47

3164

4.49

211

0.30

4310

6.11

441.94

8.45

6.25

0.48

49.63

Italian Simmental

482

578

1.20

427

0.89

316

0.66

289

0.60

292

0.61

74

0.15

1094

2.27

108.36

6.30

4.65

0.49

43.74

Piedmontese

369

543

1.47

427

1.16

366

0.99

192

0.52

351

0.95

81

0.22

1295

3.51

95.75

7.29

6.01

0.61

46.30

Marchigiana

207

591

2.86

459

2.22

329

1.59

202

0.98

389

1.88

88

0.43

1964

9.49

140.23

7.86

7.86

0.25

44.74

No Samples

Marchigiana %

Piedmontese %

Italian Simmental %

Italian Friesian %

Italian Brown %

               

1

91.07

88.76

84.31

87.56

81.66

               

2

5.88

7.73

10.07

7.83

10.71

               

3

1.53

1.17

2.34

2.39

3.59

               

4-5

0.65

0.94

1.41

0.82

2.26

               

6-10

0.65

0.70

1.17

0.82

1.09

               

10-25

0.00

0.70

0.70

0.58

0.58

               

>25

0.22

0.00

0.00

0.00

0.10

               

No Samples

Marchigiana

Piedmontese

Italian Simmental

Italian Friesian

Italian Brown

               

1

418

379

360

1063

2387

               

2

27

33

43

95

313

               

3

7

5

10

29

105

               

4-5

3

4

6

10

66

               

6-10

3

3

5

10

32

               

10-25

0

3

3

7

17

               

>25

1

0

0

0

3

               
  1. Summary of the identified copy-number variants in each of the five Bos taurus breeds. Numbers in italics are normalized by sample counts.