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Table 2 Analysis of real and simulated 3D7 resequencing data

From: A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data

  Overall hits   PFL1155w locus
Method 10×* 20×* 50×* Real data   10×* 20×* 50×* Real data
PG with γ=99% 0.82% 0.58% 0.36% 0.08%   13 13 13 13
PG with γ=99.9% 0.19% 0.11% 0.05% 0.02%   13 13 13 13
FREEC 0.00% 0.00% 0.00% 0.01%   0 0 0 13
cn.MOPS + 0.55% 0.16% 0.01% 0.30%   0 0 0 11
  1. Results refers to the (mean) percentage of overall hits detected in relation to the total number of 100-bp windows (120,309) using real and simulated data from the 3D7 resequencing sample and the corresponding (average) number of 100-bp hits detected on the GTP cyclohydrolase I gene locus (PFL1155w, 1.3 kb in size).
  2. *Results based on 10 independent simulated data sets.
  3. +Analysis performed across samples (simulated or real where appropriate).