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Table 2 Analysis of real and simulated 3D7 resequencing data

From: A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data

 

Overall hits

 

PFL1155w locus

Method

10×*

20×*

50×*

Real data

 

10×*

20×*

50×*

Real data

PG with Îł=99%

0.82%

0.58%

0.36%

0.08%

 

13

13

13

13

PG with Îł=99.9%

0.19%

0.11%

0.05%

0.02%

 

13

13

13

13

FREEC

0.00%

0.00%

0.00%

0.01%

 

0

0

0

13

cn.MOPS +

0.55%

0.16%

0.01%

0.30%

 

0

0

0

11

  1. Results refers to the (mean) percentage of overall hits detected in relation to the total number of 100-bp windows (120,309) using real and simulated data from the 3D7 resequencing sample and the corresponding (average) number of 100-bp hits detected on the GTP cyclohydrolase I gene locus (PFL1155w, 1.3 kb in size).
  2. *Results based on 10 independent simulated data sets.
  3. +Analysis performed across samples (simulated or real where appropriate).
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BMC Genomics

ISSN: 1471-2164

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