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Table 3 Summary of CNVs detected by the Poisson-Gamma model across different laboratory strains and clinical samples

From: A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data

   γ=99%   γ=99.9%
Sample Type of CNV #Hits #Loci # Gene   #Hits #Loci #Gene Largest CNV(kb)
HB3 Deletion 322 109 60   305 101 56 PFI1475 (2.0)
  Amplification 246 206 119   60 53 46 PF11_0503 (0.6)
DD2 Deletion 279 98 58   265 95 55 PFL2550w (1.7)
  Amplification 678 84 63   634 59 43 PFE1120w (14.8)
7G8 Deletion 243 125 83   205 101 61 MAL7P1.64 (1.1)
  Amplification 343 118 106   215 49 37 PFL1130w (6.7)
GB4 Deletion 262 98 48   253 92 45 PFC0110w (2.5)
  Amplification 108 84 79   47 38 36 PFL1155w (0.6)
OX005 Deletion 308 87 49   274 73 39 PFC0110w (2.8)
  Amplification 1019 772 516   192 140 118 PFD0669c (1.0)
OX006 Deletion 170 65 35   167 62 33 PF07_0013 (1.3)
  Amplification 277 226 188   90 70 64 MAL8P1.42 (1.1)
  1. Results refer to the number of individual hits (i.e., 100-bp windows) and loci (pooled hits where contiguous) using the credible levels γ = 99% and 99.9% in the analysis.