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Table 2 Characterization of cattle CNVRs on autosomes based on different platforms

From: Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins

Study

Summary statistics of CNVRs

  

Mean(Kb)

Median(Kb)

Min(Kb)

Max(Kb)

Standard deviation

Total length(Mb)

No. of CNVR

CGH-based Studies

Fadista et al. [25]

62.05

9.73

1.72

2031.34

155.05

15.76

254

Liu et al. [24]

153.75

86.19

18

1261.9

178.29

25.06

163

averge

107.90

47.96

9.86

1646.62

166.67

20.41

208.50

SNP-based Studies (54k chip)

Hou et al. [26]

204.97

131.18

32.57

5569.1

296.49

139.79

682

Bae et al. [23]

171.49

128.33

25.35

967.18

135.67

63.11

368

Hou et al. [58]

174.88

128.27

25.8

1417.77

157.98

141.83

811

Jiang et al. [60]

235.46

156.54

27

1312.35

225.47

23.78

101

averge

196.70

136.08

27.68

2316.60

203.90

92.13

490.50

SNP-based Studies (HD chip)

This study*

96.23

50.64

10.76

2806.42

201.99

34.45

358

Hou et al. [55]*

42.73

15.65

1.03

4345.96

148.5

146.91

3438

averge

69.48

33.15

5.90

3576.19

175.25

90.68

1898

Resequencing-based Studies

Bickhart et al. [8]

42.89

22.76

10.02

510.94

54.65

47.99

1119

Zhan et al. [5]

6.98

3.8

3.17

129.97

10.29

3.63

520

Stothard et al. [4]

4.16

3.17

1.84

28.03

2.96

3.29

790

 

averge

18.01

9.91

5.01

222.98

22.63

18.30

809.67

  1. *: Based on UMD3.1 bovine genome assembly, others based on Btau4.0 bovine genome assembly.