A SNP resource for Douglas-fir: de novotranscriptome assembly and SNP detection and validation

BMC Genomics

Table 2 Characteristics of the Douglas-fir transcriptome assembly using Newbler v2.3

^* The input number of reads is less than the total in Table 1 (2.96 × 10⁶) because reads shorter than 50 nt were excluded. Statistics were calculated using the sequences actually used in the assembly after applying a default minimum length of 40 for reads trimmed by Newbler.
^† Includes reads that assembled as complete reads or as partial reads.
^§ Isotigs ≥ 200 nt were deposited at DDBJ/EMBL/GenBank under accession GAEK01000000.
^‡ Statistics for the IM isogroups were calculated using the longest isotig in each isogroup.

ISSN: 1471-2164