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Table 7 Douglas-fir SNPs detected using an Illumina Infinium SNP array (n = 260 trees)

From: A SNP resource for Douglas-fir: de novotranscriptome assembly and SNP detection and validation

   No. of SNPs in category/No. of SNPs attempted or assayed (%)*
SNP category Number of SNPs Attempted (n=8769) Assayed (n=8067)
SNPs attempted 8769 100.0 108.7
SNPs assayed 8067 92.0 100.0
Called SNPs (call frequency > 0.85) 7256 82.7 89.9
Called SNPs that are polymorphic (MAF > 0) 5847 66.7 72.5
Percent of called SNPs that are polymorphic (5847/7256) = 80.6
  1. *The number of SNPs in each category is expressed as a percentage of the total number of SNPs attempted (n = 8769) and number of SNPs successfully assayed on the array (n = 8067).
  2. Successful calls are those with a GenCall score ≥ 0.15 [19].