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Table 1 Genes selected for initial studies of pH regulation in T. virens

From: PacC and pH–dependent transcriptome of the mycotrophic fungus Trichoderma virens

Protein ID

Sequence

Function

Species

40391

s ACGCCGAGACGCTCTATGAAC

Transcription factor PacC

T. virens, this study

as GGTGGTGCGACAAGAGTTCC

33825

s CGAGACAGACCAGGGAGAGC

L-ornithine N5-monooxygenase SidA (2.5E-124)

Aspergillus nidulans

as GAGTGTCGCTCAACCCATGA

43838

s GTTGGGTACAACGGCTTGGA

Siderophore-transporter (9.02E-57)

Aspergillus nidulans

as CAAGAAGGCGTTGGAGATGG

111866

s CCGATTTGGTGGCTTCAGAT

Chitinase (0)

Trichoderma harzianum

as ATTGGTGCCGACATCATTCC

67662

as ATTGGTGCCGACATCATTCC

ATPase, P-type (0)

Fusarium oxysporum

s GCTGACCTCCGACTGATTGAAG

87714

as GCCAGTGGCATCATCAAAGA

Acid phosphatase (6.50E-95)

Aspergillus nidulans

s GCCTTTGACCGCTTTGTTGT

53036

as AGTTGGGCTCAGAAGGGTGA

Alpha-L-arabinofuranosidase (0)

Aspergillus nidulans

s TTCGCCGAAGATGCTACGTT

59192

as ATGTGTGAACACCGCCATTG

P-ATPase

T. virens

s CTGGCCGTCATTCTCCTCAA

as GGGTTTCTGCCTTGACGGTA

72838

s CCAGGCACCAAGAATAAGGTCAT

Xylanase (8.00E-76)

Aspergillus nidulans

as GCCAGTGGATGGGTTGTAGG

76958

s GTGTCATCTGGGTCGTTGGTT

Glucose permease (0)

Trichoderma harzianum

as AGGGACCTGAGCAGATTCGAT

81777

s GCACCAGCAAACCGGAAGC

Aspartyl protease (0)

Trichoderma harzianum

as GTAACCGGTGGCAGTGAAGC

86768

s GGTCTCGGTGTCGGTTTCG

High affinity sugar/H+ symporter (0)

Aspergillus niger

 

as GCAAGAAGCGAGGAGGATACC

  
  1. Candidate genes whose expression might depend on pH and/or PacC were chosen from published studies in Aspergillus nidulans[28], Fusarium oxysporum[5] and T. harzianum[35]. A T. virens P-type ATPase (ID 59192) was already available from a differential library for transcripts expressed preferentially in cultures grown on autoclaved R. solani material. Protein ID numbers refer to the T. virens v1.0 sequence. E values (in parentheses) are from BLASTP searches of the T. virens genome with the corresponding genes indicated in the next column (species, GenBank accession).