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Table 2 Unique GENCODE V7 non-exonic peptides and their overlap with different expression data and predicted exons

From: Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions

Total non-exonic peptides Data types Number of distinct peptides that overlap
420 HAIB RNA-Seq 268
  GENSCAN gene predictions 215
  Human ESTs 175
  Burge RNA-Seq 120
  Ensembl exons 281
  UW Affy Exon Array 196
  Duke Affy Exon Array 221
  1. Results presented are at a 1% FDR. Information about each dataset can be found with its individual track on the UCSC Genome Browser.