Tandem repeats derived from centromeric retrotransposons

BMC Genomics

Table 1 Sequence similarity between CRM1TR subsequences and CRM1A or CRM1B consensus sequences

Identity of subsequences from CRM1TR monomers at the two CRM1TR loci (I or II) to the two CRM1 subfamily variants CRM1A and CRM1B is shown in bitscores. Note that all subsequences of CRM1TR i.e. S, IR variants (IR, IR.c1, IR.c2, IR.c3) and E_B have high homology to CRM1B, except end sequence variant E_A, which is more similar to CRM1A.

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