Table 1 List of CNVs identified via WGS and Sanger resequencing
MIRU locus | Read depth candidate strains | Mate pair candidate strains | Copy numbers |
|---|---|---|---|
154-A | None | None | 1 |
154-B | None | None | 2 |
424 | None | None | 2 |
577 | None | None | 2 |
580 | A-3 | None | 3 |
802 | H-3 | H-3 | 3; (H-3 = 4) |
960-A | I-2 | None | 3 |
960-B | None | None | 1 |
1644 | None | None | 3 |
1955-A | None | None | 1 |
1955-B | None | None | 1 |
2059 | None | None | 1 |
2163b | None | None | 3 |
2165* | None | None | 3 |
2347 | None | None | 1 |
2401-A | None | None | 3 |
2401-B | None | None | 1 |
2461 | None | None | 2 |
2531-A | None | None | 1 |
2531-B | None | None | 1 |
2687-A | None | None | 1 |
2687-B | None | None | 1 |
2996 | None | C-1 | 5 |
3007 | None | None | 3 |
3171* | None | None | 2 |
3192 | G-3 | C-1 | 2; (G-3 = 1) |
3690 | None | C-1 | 5 |
4052 | None | None | 3 |
4156 | None | None | 3 |
4348 | None | None | 2 |