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Table 2 Comparing mean mate pair distance between H37Rv and single copy reference genomes

From: The mutation rate of mycobacterial repetitive unit loci in strains of M. tuberculosisfrom cynomolgus macaque infection

Strain

H37Rv (MIRU)

Single copy (MIRU)

H37Rv (+/− 100 bp)

Single copy (+/− 100 bp)

A-1

165

128

157

146

A-3

188

137

178

165

B-1

163

124

153

142

C-1

156

120

148

138

C-2

206

159

190

174

E-1

205

159

188

173

F-1

174

161

172

169

G-1

157

119

147

137

G-3

235

168

203

177

H-2

201

159

188

174

H-3

199

155

184

170

I-1

218

180

208

193

I-2

230

187

218

200

I-3

223

183

204

198

I-4

224

176

212

193

I-6

204

157

184

171

I-7

202

151

182

166

  1. Mean mate pair distance values were calculated for each strain at MIRU locus 3192. Values were gathered for the MIRU coordinates as well as the surrounding (+/100 bp) region.