Table 2 Summary details of sequences produced by SOAPdenovo assembly after Illumina sequencing
From: De novo assembly and characterization of Camelina sativatranscriptome by paired-end sequencing
Sequences (n) | Base pairs (Mbp) | Mean length (bp) | N50 (bp) | |
|---|---|---|---|---|
Clean reads | 26,942,130 | 2,424.79 | 90 | - |
Contigs (≥ 75 bp) | 204,190 | 37.24 | 182 | 194 |
Scaffolds (≥ 100 bp) | 129,539 | 32.72 | 253 | 284 |
Total unigenes (≥ 100 bp) | 83,493 | 26.65 | 319 | 346 |