Table 3 Assembly results with TAIR 10.0 CDS using SOAPdenovo and Trinity software
From: De novo assembly and characterization of Camelina sativatranscriptome by paired-end sequencing
SOAPdenovo | Trinity | |
|---|---|---|
Number of unigenes/transcripts (n) | 83,493 | 103,196 |
Number of unigenes/transcripts mapped to TAIR CDS (n) | 52,864 | 70,753 |
Total number of CDS in TAIR (n) | 35,386 | 35,386 |
Total number of mapped CDS in TAIR(n) | 22,435 | 22,433 |
Total length of CDS in TAIR (bp) | 43,546,300 | 43,546,300 |
Total length of mapped CDS in TAIR (bp) | 31,264,828 | 31,145,430 |
Total length of unigenes/transcripts (bp) | 26,651,285 | 71,935,591 |
Total length of mapped unigenes/transcripts(bp) | 18,193,518 | 55,883,786 |
Total length of overlapping sequences (bp) | 15,234,784 | 44,020,562 |
Percentage of mapped CDS number | 22,435/35,386 = 63.4% | 22,433/35,386 = 63.4% |