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Table 4 Summary of Camelina unigene annotations from SOAPdenovo assembly

From: De novo assembly and characterization of Camelina sativatranscriptome by paired-end sequencing

 

Unigenes (n)

Annotations (n)

Functional classification

All assembled unigenes

83,493

-

-

Gene annotations against Arabidopsis thaliana protein of NR

45,307

45,307

-

Gene annotations against Arabidopsis lyrata protein of NR

16,969

16,969

-

Gene annotation against Brassica protein of NR

722

722

-

Unique gene annotations against plant NR

67,497

67,497

-

Gene annotation against Swiss-Prot

40,804

40,804

-

Gene annotation against COG

14,190

14,190

25 categories

Gene annotation against KEGG

27,042

27,042

119 pathways

GO annotations for biological process

23,524

49,164

27 sub-categories

GO annotations for cellular component

25,885

37,439

9 sub-categories

GO annotations for molecular function

26,825

30,888

10 sub-categories

All annotated unigenes

67,791

-

-

Unigenes matching all four databases

11,685

-

-