BMC Genomics

Table 1 RXE based on mapping parameters

From: Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach

		Mapping parameter
Tissue	Unique	Non-unique	Non-unique splicing
X^m, Human lymphoblast	−0.86	−0.34	0.21
X^p, Human lymphoblast	−0.92	−0.54	−0.04
Human lymphoblast	−0.75	−0.42	−0.20
Human brain	−0.32	−0.15	−0.00
Human liver	−1.43	−1.06	−0.79
Mouse brain	−0.68	−0.53	−0.20
X^m, mouse brain	−0.99	0.88	−0.70
X^p, mouse brain	−0.76	−0.88	−0.96
XX, Mouse Brain	−0.87	−0.82	−0.86
XY, mouse brain	−0.45	−0.44	−0.60

Relative X-chromosome expression values based on mapping parameters. Numbers based on calculations from raw number of reads mapped. No annotation was used to delineate between genetic categorical groups (i.e. exon, introns, etc.). All ratios were log₂-transformed to maintain consistency with other expression values.

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ISSN: 1471-2164

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