Skip to main content

Table 4 Small RNA and riboprotein enrichment based on library preparation (Illumina or SOLiD)

From: Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach

  Tissue Xp lymphoblast (SOLiD) Human lymphoblast (Illumina) XY mouse brain (SOLiD) Mouse brain (Illumina)
  Mapping parameter Unique Non-unique NUS Unique Non-unique NUS Unique Non-unique NUS Unique Non-unique NUS
Category Small RNAs 193 190 4 2 8 1 47 62 2 4 2 4
  Ribo 20 26 42 58 80 62 2 11 3 3 8 3
  Other 37 34 204 190 165 187 201 177 245 243 240 243
  1. We compared small RNA (sno and micro) and riboprotein biases using three different mapping parameters: unique, non-unique, and non-unique splicing (NUS). Four different libraries were analyzed including: Xp lymphoblast (SOLiD), normal human lymphoblast (Illumina), mouse brain (Illumina) and mouse brain 40, XY (SOLiD).