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Table 2 QTL affecting growth traits measured in this study

From: Genetic dissection of growth traits in a Chinese indigenous × commercial broiler chicken cross

QTL

Trait

QTL (cM)

Peak marker

F value1

Additive effect ± SE

Var%2

CAU_AB 1a

BW6

94

rs13849470

11.7**

28.8 ± 5.9

3.9%

 

BW8

89

rs15225667

12.3**

42.9 ± 8.7

3.9%

 

BW10

89

rs15225667

11.4*

54.6 ± 11.6

3.3%

 

BW12

111

rs13858917

13.0**

76.0 ± 15.1

3.8%

CAU_AB 1b

SL12

250

rs13910430

11.6*

−0.84 ± 0.21

3.0%

CAU_AB 1c

BW2

389

rs13552715

14.6**

6.3 ± 1.2

5.3%

 

BW4

399

rs13974249

30.3**

26.2 ± 3.5

10.8%

 

BW6

398

rs15501880

36.9**

53.9 ± 6.4

12.9%

 

BW8

398

rs15501880

43.4**

89.0 ± 9.7

14.9%

 

BW10

392

rs13972116

47.4**

125.6 ± 13.0

16.0%

 

BW12

392

rs13972116

47.0**

154.1 ± 15.9

15.9%

 

GR 0–4

399

rs13974249

30.3**

26.1 ± 3.5

10.8%

 

GR 4–8

392

rs13972116

15.3**

38.8 ± 7.0

5.6%

 

SC6

391

rs14916980

26.7**

0.06 ± 0.01

9.5%

 

SC8

391

rs14916980

19.7**

0.06 ± 0.01

7.1%

 

SC10

392

rs13972116

30.8**

0.07 ± 0.01

10.9%

 

SC12

392

rs13972116

35.1**

0.09 ± 0.01

12.3%

 

SL10

392

rs13972116

20.9**

1.4 ± 0.21

6.3%

 

SL12

392

rs13972116

38.0**

2.1 ± 0.24

10.9%

 

FCR 6–8

396

rs13973293

18.8**

−0.15 ± 0.02

6.8%

 

FCR 8–10

389

rs13552715

17.2**

−0.14 ± 0.03

6.2%

 

SW

392

rs13972116

44.5**

2.2 ± 0.24

15.2%

 

AFW

392

rs13972116

47.0**

−16.1 ± 1.7

16.0%

CAU_AB 2a

SC4

213

rs1422304

9.8*

−0.03 ± 0.01

3.5%

CAU_AB 2b

BW2

281

rs13794645

14.0**

5.9 ± 1.1

4.8%

CAU_AB 4

SC6

152

rs14499051

11.3*

−0.01 ± 0.01

3.4%

CAU_AB 12

AFW

16

rs14971272

12.3**

−5.2 ± 1.4

3.5%

CAU_AB 27

BW6

13

rs13620303

18.9**

31.6 ± 6.2

5.4%

 

BW8

13

rs13620303

20.5**

46.9 ± 9.3

5.8%

 

BW10

13

rs13620303

17.6**

56.0 ± 12.3

5.4%

 

BW12

13

rs13620303

14.5**

70.9 ± 15.3

4.4%

 

GR 4–8

11

rs14302116

12.4**

30.1 ± 6.6

4.3%

 

SC6

34

rs15242584

19.2**

0.05 ± 0.01

6.3%

 

SC8

30

rs16047281

19.9**

0.05 ± 0.01

6.7%

 

SC10

29

rs16040742

23.9**

0.06 ± 0.01

7.7%

 

SC12

30

rs16047281

17.9**

0.06 ± 0.01

5.7%

 

SL4

21

rs15241178

13.1**

0.63 ± 0.13

4.7%

 

SL6

32

rs14303761

18.9**

0.83 ± 0.14

6.9%

 

SL8

32

rs14303761

23.1**

1.1 ± 0.17

8.3%

 

SL10

32

rs14303761

49.5**

2.0 ± 0.20

16.6%

 

SL12

33

rs16207882

53.0**

2.4 ± 0.23

17.6%

 

AFW

27

rs16719300

17.3**

−8.7 ± 1.5

5.3%

CAU_AB 28

SC10

5

rs16209969

12.0**

−0.03 ± 0.01

3.5%

 

SC12

7

rs15246230

11.9*

−0.04 ± 0.01

3.6%

  1. 1 *5% genome-wide significance. **1% genome-wide significance. 2 the percentage of phenotypic variation explained by the detected QTL.