Table 1 Number of reads mapped to viral reference genomes from each Illumina sequencing run
Sample | Accession | Description | Total reads | DWV | VDV-1 | IAPV | ABPV | KBV |
|---|---|---|---|---|---|---|---|---|
BP | SRX180863 | Dissected Malpighian tubules, pyloric valve, and sting glands from 8–50 workers from multiple California colonies | 21,057,716 | 349,567 | 38 | 7,600 | 0 | 24 |
CCD- | SRX028145 | 504 adult worker abdomens from 63 colonies across U.S. | 22,103,561 | 899 | 0 | 3,818 | 0 | 0 |
CCD+ | SRX028143 | 488 adult worker abdomens from 61 colonies across U.S. | 53,040,678 | 8,165 | 1 | 773 | 13 | 93 |
BRL* | SRX210759 | 15 pupae from a single Maryland colony | 29,089,788 | 384,052 | 3 | 15,548,490 | 0 | 0 |
LARV | SRX180864 | 10 4th-instar larvae from a single Georgia colony | 30,295,220 | 149,139 | 0 | 2,028,649 | 0 | 0 |
WEAV | SRX201544 | 6 workers from a single Texas colony | 27,877,305 | 648,871 | 1 | 0 | 0 | 0 |
VARROA | SRX174087 | ~1,000 mites pooled from several colonies at a single Maryland site | 22,920,031 | 2,758,133 | 6 | 0 | 0 | 0 |