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Table 3 The genomic prediction of N. lugens clip-domain serine proteases and serine protease inhibitors

From: The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens

Predicted gene GenBank ID Locus Size (aa) Exon Orientation UTR Best match Similarity
Clip domain serine proteases
proclotting enzyme-1 KC355213 scaffold424 397 7 + no A.pisum 56%
proclotting enzyme-2 KC355214 scaffold424 376 11 - no A.pisum 55%
proclotting enzyme-3 KC355215 scaffold1854 460 9 - have A.pisum 66%
proclotting enzyme-4 KC355216 scaffold32 535 8 + no A.pisum 62%
proclotting enzyme-5 KC355217 scaffold973 264 5 + no D.plexippus 68%
serine protease snake-1 KC355219 scaffold407 363 7 + have A.pisum 54%
serine protease snake-2 KC355220 scaffold183 partial 5 - no T. castaneum 51%
serine protease snake-3 KC355221 scaffold183 partial 7 - no A.pisum 47%
serine protease snake-4 KC355222 scaffold3538 546 7 + no P. h.corporis 58%
serine protease snake-5 KC355223 scaffold407 358 8 - no A.pisum 41%
serine protease snake-6 KC355224 scaffold407 378 8 - no A.pisum 45%
serine protease snake-7 KC355225 scaffold407 362 6 - no A.pisum 53%
Serine protease inhibitors
serpin-1 KC355226 scaffold2106 partial 8 + no C. suppressalis 69%
serpin-2 KC355239 scaffold1141 402 5 + have A.gambiae 55%
serpin-3 KC355227 scaffold690 400 5 + have T. castaneum 53%
serpin-4 KC355228 scaffold1199 408 8 - no A.pisum 60%
serpin-5 KC355229 scaffold914 492 7 - no B. mori 73%
serpin-6 KC355230 scaffold3763 partial 11 - no C. quinquefasciatus 62%
serpin-7 KC355231 scaffold1822 505 4 + no A.pisum 57%
serpin-8 KC355232 scaffold1121 partial 4 + no A.pisum 83%
serpin-9 KC355233 scaffold1452 partial 5 - no A.pisum 64%
  1. The genomic organization of exons and introns of the genes for pattern recognition proteins is predicted based on the mRNA-genome alignments at the NCBI spideyweb (http://www.ncbi.nlm.nih.gov/spidey/spideyweb.cgi). A.pisum, Acyrthosiphon pisum; D. plexippus, Danaus plexippus; T. castaneum , Tribolium castaneum; P. h. corporis, Pediculus humanus corporis; C. suppressalis, Chilo suppressalis; A. gambiae, Anopheles gambiae; B. mori, Bombyx mori; C.quinquefasciatus, Culex quinquefasciatus.