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Table 4 The gene prediction of N. lugens immune responsive effectors

From: The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens

Predicted gene

GenBank ID

Locus

Size (aa)

Exon

Orientation

UTR

Best match

Similarity

Mw

pI

reeler

KC355218

scaffold666

163

3

+

no

T. infestans

60%

15.31

9.28

defensin B

KC355196

scaffold229

104

2

+

have

R.prolixus

74%

8.35

8.31

defensin A

KC355195

scaffold229

104

2

+

no

T. infestans

74%

8.36

6.06

c-type lysozyme

KC355194

scaffold427

154

2

-

no

P. h. corporis

68%

14.68

6.64

i-type lysozyme1

KC355204

scaffold515

partial

3

+

no

P. americana

58%

  

i-type lysozyme2

KC355205

scaffold2772

158

3

-

no

A. pisum

75%

15.22

5.09

i-type lysozyme3

KC355206

scaffold374

163

6

-

no

P.americana

76%

15.40

5.06

i-type lysozyme4

KC355207

scaffold6850

partial

3

-

no

P.americana

77%

  

i-type lysozyme5

KC355208

scaffold186

166

3

-

no

P.americana

55%

15.89

5.29

i-type lysozyme6

KC355209

scaffold186

partial

3

+

no

P.americana

62%

  

i-type lysozyme7

KC355210

scaffold83

176

4

+

have

D. plexippus

48%

17.69

7.88

  1. The genomic organization of exons and introns of the immune responsive genes was predicted based on the mRNA-genome alignments at the NCBI spideyweb (http://www.ncbi.nlm.nih.gov/spidey/spideyweb.cgi). Molecular weight (Mw) and isoelectric point (pI) were analyzed using Compute pI/MW tool (http://web.expasy.org/compute_pi/). T. infestans, Triatoma infestans; R. prolixus, Rhodnius prolixus; P. h. corporis, Pediculus humanus corporis; P. americana, Periplaneta Americana; A. pisum, Acyrthosiphon pisum; D.plexippus, Danaus plexippus.