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Table 4 The gene prediction of N. lugens immune responsive effectors

From: The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens

Predicted gene GenBank ID Locus Size (aa) Exon Orientation UTR Best match Similarity Mw pI
reeler KC355218 scaffold666 163 3 + no T. infestans 60% 15.31 9.28
defensin B KC355196 scaffold229 104 2 + have R.prolixus 74% 8.35 8.31
defensin A KC355195 scaffold229 104 2 + no T. infestans 74% 8.36 6.06
c-type lysozyme KC355194 scaffold427 154 2 - no P. h. corporis 68% 14.68 6.64
i-type lysozyme1 KC355204 scaffold515 partial 3 + no P. americana 58%   
i-type lysozyme2 KC355205 scaffold2772 158 3 - no A. pisum 75% 15.22 5.09
i-type lysozyme3 KC355206 scaffold374 163 6 - no P.americana 76% 15.40 5.06
i-type lysozyme4 KC355207 scaffold6850 partial 3 - no P.americana 77%   
i-type lysozyme5 KC355208 scaffold186 166 3 - no P.americana 55% 15.89 5.29
i-type lysozyme6 KC355209 scaffold186 partial 3 + no P.americana 62%   
i-type lysozyme7 KC355210 scaffold83 176 4 + have D. plexippus 48% 17.69 7.88
  1. The genomic organization of exons and introns of the immune responsive genes was predicted based on the mRNA-genome alignments at the NCBI spideyweb (http://www.ncbi.nlm.nih.gov/spidey/spideyweb.cgi). Molecular weight (Mw) and isoelectric point (pI) were analyzed using Compute pI/MW tool (http://web.expasy.org/compute_pi/). T. infestans, Triatoma infestans; R. prolixus, Rhodnius prolixus; P. h. corporis, Pediculus humanus corporis; P. americana, Periplaneta Americana; A. pisum, Acyrthosiphon pisum; D.plexippus, Danaus plexippus.