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Table 1 Validation summary of deletions, inversions and translocations for each sample

From: Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing

Tumor sample Deletion Inversion Translocation
  Attempted Non-validated Constitutional Somatic Attempted Non-validated Constitutional Somatic Attempted Non-validated Constitutional Somatic
113 T 8 8 0 0 0 0 0 0 2 2 0 0
114 T 5 4 1 0 0 0 0 0 5 2 3 0
116 T 1 0 1 0 4 2 0 2 1 0 0 1
117 T 0 0 0 0 0 0 0 0 1 0 1 0
118 T 3 1 2 0 0 0 0 0 12 5 1 6
119 T 1 0 0 1 3 3 0 0 3 0 0 3
120 T 3 0 3 0 3 2 0 1 3 0 0 3
147 T 2 0 2 0 0 0 0 0 0 0 0 0
148 T 4 0 4 0 5 5 0 0 8 3 3 2
149 T 16 4 8 4 1 0 0 1 9 4 1 4
150 T 5 1 4 0 1 1 0 0 0 0 0 0
151 T 4 0 4 0 1 0 0 1 1 1 0 0
152 T 1 0 0 1 0 0 0 0 0 0 0 0
153 T 19 9 9 1 6 3 3 0 12 3 3 6
154 T 7 1 5 1 1 0 0 1 4 1 2 1
  1. Due to the size of mate-pair inserts, insertions could not be validated by PCR. Attempted denotes the number of rearrangements attempted to validate, and Constitutional and Somatic denote the number of validated rearrangements in the normal and tumor samples validated by PCR followed by Sanger sequencing.