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Table 1 Analysis methods employed for differential expression detection in this study

From: Transcriptomics of morphological color change in polychromatic Midas cichlids

Analysis

Package

Comparison

Assembly

a

edgeR

Pairwise

Midas cichlid

b

DESeq

Pairwise

Midas cichlid

c

baySeq

Pairwise

Midas cichlid

d

baySeq

Multiple

Midas cichlid

e

edgeR

Pairwise

Tilapia

f

DESeq

Pairwise

Tilapia

g

baySeq

Pairwise

Tilapia

h

baySeq

Multiple

Tilapia