Table 2 All differentially expressed genes (DEGs) detected in this study
From: Transcriptomics of morphological color change in polychromatic Midas cichlids
Annotation | Analyses | Comparison | Expression pattern | Best hit | |
|---|---|---|---|---|---|
1 | TYR | g | N vs. G | 1 | XP_003441635.1 |
c | T vs. G | ||||
2 | TYRP1a | a,b,c,d | N vs. G | 1 | XP_003450374.1 |
a,c,d | N vs. T | ||||
3 | TYRP1b | c,e,f,g,h | N vs. G | 1 | AAL84110.1 |
d | N vs. T | ||||
d,e,h | T vs. G | ||||
4 | SLC24a5 | a,c,d,g,h | N vs. G | 1 | Q49SH1.1 |
a,c,g,h | N vs. T | ||||
5 | PMELa | a,b,c,d,e,g,h | N vs. G | 1 | AAI29134.1| |
d | N vs. T | ||||
a,b,c,d,e,f,h | T vs. G | ||||
6 | MREG | a,b,c,d,e,fg | N vs. G | 1 | NP_001002167.1 |
d | N vs. T | ||||
7 | CXCL13/IL8 | b,c,d | N vs. G | 2 | XP_003444508.1 |
a,c,d | N vs. T | ||||
8 | CX41.8 | e | N vs. G | AAI63086.1 | |
9 | SLC6a15 | c,d,g,h | N vs. G | 2 | XP_003449204.1 |
a,c,d,g,h | N vs. T | ||||
10 | Uncharacterized | a,b,c,d | N vs. G | - | NP_001091866.1 |
a,d | N vs. T | ||||
11 | Uncharacterized | a,c,d | N vs. G | 2 | XP_003460123.1 |
a,c,d | N vs. T | ||||
12 | RT 1 | a,c,d | N vs. G | 1 | NP_001025268.1 |
a,c,d | N vs. T | ||||
b | T vs. G | ||||
13 | Uncharacterized | e.h | N vs. G | 3 | BAE33391.1| |
h | N vs. T | ||||
14 | Uncharacterized | g,h | N vs. G | 2 | XP_003460121.1 |
g,h | N vs. T | ||||
15 | RIMKA | c,d | N vs. G | 2 | XP_003444930.1 |
c,d | N vs. T | ||||
16 | RT 2 | a,c | N vs. T | 1 | BAC82613.1 |
17 | Uncharacterized | g | N vs. T | 1 | - |
18 | FYNa | g | N vs. G | NP_001007287.1 | |
19 | Uncharacterized | e | N vs. G | 1 | XP_002663842.1| |
20 | PKHD1L1 | h | N vs. G | - | XP_003447322.1 |
h | N vs. T | ||||
21 | TRIM16 | e | N vs. G | 3 | XP_001921089.3| |
22 | Uncharacterized | g | N vs. T | 2 | XP_003460506.1 |
23 | Uncharacterized | c | T vs. G | XP_003455740.1 | |
24 | RASEF | a | N vs. G | 3 | XP_003446171.1 |
25 | BDH1-like | a | N vs. G | 3 | XP_003453238.1 |
26 | TTN-like | d | N vs. G | 3 | A2ASSVI.1 |
d | N vs. T | ||||
27 | PTGIS | a | N vs. T | 2 | XP_003441326.1 |
28 | IER2 | a | N vs. G | 2 | XP_003454129.1 |
29 | Uncharacterized | c | N vs. T | - | XP_003199799.1 |
30 | Uncharacterized | c,d | N vs. G | - | XP_003440066.1 |
c,d | N vs. T | ||||
31 | Uncharacterized | a | N vs. G | EAW84958.1| | |
32 | CRFB4 | a,c | N vs. G | 3 | XP_003443307 |
33 | Uncharacterized | a | N vs. G | BAE33391 | |
34 | ZBTB20 | a | N vs. G | 3 | XP_003446897.1 |
35 | CNFN | a | N vs. T | 2 | XP_003457068.1 |
36 | FAM89a | d | N vs. T | 1 | XP_003456674.1 |
d | N vs. G | ||||
37 | STC1 | a,c | N vs. T | 1 | XP_003452723.1 |
38 | C-FOS | a | N vs. G | 2 | P53450.1 |
39 | MC6AST5 | a | N vs. T | 1 | XP_003447395.1 |
40 | WFDC2 | d | N vs. G | 1 | XP_684531.2 |
d | N vs. T | ||||
41 | CCDC9 | a | N vs. G | 3 | XP_003456447.1 |
42 | RTN3 | c | N vs. T | 1 | XP_003459827.1 |
43 | RT-TF2 | a | T vs. G | 1 | AAC33526.2 |
44 | JUNb | a | N vs. G | 2 | XP_003443124.1 |