Table 5 Selection of some of the novel relevant immune-related genes identified in the Turbot 3 database
Gene name | Gene abbreviation | Contig length | Gene Ontology | E-value | Species | Annotation resource |
|---|---|---|---|---|---|---|
DNA fragmentation factor, 40kDa, beta polypeptide | DFF40 | 607 | GO:0006917 GO:0006309 GO:0030263 | 2,00E-73 | Danio rerio | Uniref90 |
BCL2-like 1 | BCL-XL | 698 | GO:0045087 GO:0045768 | 6,00E-19 | Osmerus mordax | nr |
Tumor necrosis factor receptor-associated factor 2 | TRAF2 | 528 | GO:0045087 GO:0008624 GO:0050870 GO:0042981 | 2,00E-53 | Oplegnathus fasciatus | Uniref90 |
Interleukin 1 receptor activated kinase 1 | IRAK1 | 842 | GO:0045087 GO:0008063 GO:0006916 | 6,00E-28 | Siniperca chuatsi | Uniref90 |
JNK1/MAPK8-associated membrane protein | JNK1/MAPK8 | 223 | GO:0006986 GO:0030433 | 8,00E-23 | Uniref90 | |
Toll-interacting protein | TOLLIP | 401 | GO:0045087 GO:0006954 GO:0045321 | 2,00E-55 | Salmo salar | nr |
TNF receptor-associated factor 6 | TRAF6 | 187 | GO:0045087 GO:0006915 GO:0008063 GO:0050852 | 5,00E-15 | Gasterosteus aculeatus | nr |
FYN oncogene related to SRC, FGR, YES | FYN | 467 | GO:0006468 GO:0016310 | 1,00E-74 | Danio rerio | nr |
Cytoplasmic protein 1 | NCK1 | 382 | GO:0042110 GO:0050852 GO:0042102 | 4,00E-38 | Danio rerio | nr |
Cytoplasmic protein NCK2 | NCK2 | 779 | GO:0042102 GO:0042110 | 3,00E-12 | Amniota | Uniref90 |
Disks large homolog 1 | DLG1 | 402 | GO:0070830 GO:0044419 | 2,00E-09 | Xenopus tropicalis | nr |
Mitogen-activated protein kinase 8 | COT | 705 | GO:0031295 GO:0000165 GO:0000186 | 1,00E-07 | Tetraodon nigroviridis | Uniref90 |
T-cell-specific surface glycoprotein CD28 | CD28 | 689 | GO:0031295 GO:0006959 GO:0008624 GO:0042102 GO:0045768 GO:0002863 GO:0045086 GO:0045066 | 2,00E-18 | Salmo salar | nr |
GRB2-related adaptor protein 2 | GADS | 721 | GO:0031295 GO:0050852 GO:0007265 GO:0007267 | 5,00E-24 | Tetraodon nigroviridis | Uniref90 |
Growth factor receptor-bound protein 2 | GRB2 | 370 | GO:0031295 GO:0050900 GO:2000379 GO:0030168 GO:0007265 | 3,00E-17 | Oreochromis niloticus | nr |