Table 9 Summary statistics of SNPs in the Turbot 3 database
No. Contigs | No. SNPs | |
|---|---|---|
Total number SNPs | 7,030 | |
Total contigs with SNPs | 1,040 | |
with 4 sequences | 131 | 270 |
with 5-10 sequences | 620 | 2,516 |
with 11-20 sequences | 147 | 926 |
with 21-30 sequences | 63 | 859 |
with 31-50 sequences | 40 | 940 |
with > 50 sequences | 39 | 1,859 |
Total number of transitions | 2,223 | |
C/T | 1,328 | |
A/G | 895 | |
Total number of transversions | 2,404 | |
A/T | 500 | |
A/C | 746 | |
T/G | 614 | |
C/G | 544 | |
Total number of indels | 1,578 | |
Tri-allelicpolymorphisms | 1,044 | |
Tetra-allelicpolymorphisms | 113 |