Table 3 BLAST based annotation of N. furzeri transcript contigs
Database | Contigs hit | Database entries hit | Avg. identity | Database entries used | Annotated contigs |
|---|---|---|---|---|---|
Ensembl fish proteins | 98,941 | 38,355 | 73% | 37,739 (81%) | 92,857 (85%) |
UniProt | 98,053 | 42,361 | 71% | 2,643 (6%) | 3,425 (4%) |
NCBI nr proteins | 96,548 | 41,500 | 71% | 956 (2%) | 1,450 (1%) |
Refseq human proteins | 80,671 | 18,071 | 61% | 305 (1%) | 497 (1%) |
NCBI UniGene transcripts | 107,901 | 36,593 | 77% | 3,206 (7%) | 7,113 (6%) |
Ensembl fish transcripts | 98,099 | 39,301 | 77% | 1,369 (3%) | 3,690 (3%) |
Total | 122,177 | Â | Â | 46,218 (100%) | 109,032 (100%) |