Skip to main content

Table 3 Site test of adaptive evolution for N. bombycis paralogous genes

From: Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation

Description CPG Members Duplicate type LRT statistics dN/dS
M1 vs. M2 M7 vs. M8 M8 vs. M8a
Hypothetical protein CPG199 4 DD 17.30*** 17.68*** 17.07*** 6.55472
Hypothetical protein CPG293 4 SD,DD 7.34* 7.58* 6.68* 67.43545
Hypothetical protein CPG446 3 TD 15.34*** 16.15*** 16.52*** 96.64162
Hypothetical protein CPG767 3 TD,DD 13.80** 13.92*** 13.26** 12.30571
Surface adhesion protein CPG844 3 SD, DD 21.04*** 21.03*** 22.81*** 6.72603
Serine protease inhibitor 106 CPG945 3 TD,DD 5.85 5.92 5.8 19.13308
Serine protease inhibitor 106 CPG1974 2 DD 15.81*** 16.31** 15.81*** 52.1588
LPXTG-motif cell wall anchor domain protein+ CPG1776 2 SD 14.38*** 14.39** 14.38*** 20.02006
DnaJ homolog subfamily C member 9 CPG1792 2 SD 13.76** 13.85*** 19.87*** 57.65414
NIK and IKK(beta) binding protein CPG1878 2 SD 12.22** 12.59** 14.57*** 36.70677
Replication-associated protein CPG2140 2 DD 18.67*** 18.76*** 21.14*** 15.15205
Glucan endo-1,6-beta-glucosidase CPG1640 2 DD 5.72 5.72 9.64** 61.53906
Integrator complex subunit 4 CPG2120 2 SD 8.46* 8.59* 8.22* 14.58649
Hypothetical protein CPG961 3 DD 21.04*** 22.99*** 19.99*** 9.5982
Hypothetical protein CPG1520 2 SD 15.28*** 15.37*** 15.13*** 8.84271
Hypothetical protein CPG1637 2 SD 18.44*** 18.75*** 20.57*** 14.62068
Hypothetical protein CPG987 3 DD 13.65** 13.37** 13.11** 39.08442
Hypothetical protein CPG1865 2 SD 10.90** 10.94** 10.70** 23.75418
Hypothetical protein CPG1967 2 SD 6.06* 6.81* 5.48 29.25563
Hypothetical protein CPG2026 2 DD 8.28* 8.41* 15.98*** 15.9724
Hypothetical protein CPG2083 2 DD 29.01*** 29.00*** 31.16*** 61.60344
hypothetical protein CPG775 3 SD 14.05*** 14.05*** 12.37** 5.3171
Hypothetical protein CPG2128 2 SD 17.79*** 17.85*** 19.27*** 45.49562
Hypothetical protein CPG869 3 SD, DD 17.45*** 17.85*** 17.31*** 8.16665
  1. Note: SD, segmental; TD, Tandem; DD, Disperse; M1 vs. M2, LRT statistic for model M1 versus M2; M7 vs. M8, LRT for model M7 versus M8; * Significance with P < 0.05; ** Significance with P < 0.01; *** Significance with P < 0.001.