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Table 3 Site test of adaptive evolution for N. bombycis paralogous genes

From: Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation

Description

CPG

Members

Duplicate type

LRT statistics

dN/dS

M1 vs. M2

M7 vs. M8

M8 vs. M8a

Hypothetical protein

CPG199

4

DD

17.30***

17.68***

17.07***

6.55472

Hypothetical protein

CPG293

4

SD,DD

7.34*

7.58*

6.68*

67.43545

Hypothetical protein

CPG446

3

TD

15.34***

16.15***

16.52***

96.64162

Hypothetical protein

CPG767

3

TD,DD

13.80**

13.92***

13.26**

12.30571

Surface adhesion protein

CPG844

3

SD, DD

21.04***

21.03***

22.81***

6.72603

Serine protease inhibitor 106

CPG945

3

TD,DD

5.85

5.92

5.8

19.13308

Serine protease inhibitor 106

CPG1974

2

DD

15.81***

16.31**

15.81***

52.1588

LPXTG-motif cell wall anchor domain protein+

CPG1776

2

SD

14.38***

14.39**

14.38***

20.02006

DnaJ homolog subfamily C member 9

CPG1792

2

SD

13.76**

13.85***

19.87***

57.65414

NIK and IKK(beta) binding protein

CPG1878

2

SD

12.22**

12.59**

14.57***

36.70677

Replication-associated protein

CPG2140

2

DD

18.67***

18.76***

21.14***

15.15205

Glucan endo-1,6-beta-glucosidase

CPG1640

2

DD

5.72

5.72

9.64**

61.53906

Integrator complex subunit 4

CPG2120

2

SD

8.46*

8.59*

8.22*

14.58649

Hypothetical protein

CPG961

3

DD

21.04***

22.99***

19.99***

9.5982

Hypothetical protein

CPG1520

2

SD

15.28***

15.37***

15.13***

8.84271

Hypothetical protein

CPG1637

2

SD

18.44***

18.75***

20.57***

14.62068

Hypothetical protein

CPG987

3

DD

13.65**

13.37**

13.11**

39.08442

Hypothetical protein

CPG1865

2

SD

10.90**

10.94**

10.70**

23.75418

Hypothetical protein

CPG1967

2

SD

6.06*

6.81*

5.48

29.25563

Hypothetical protein

CPG2026

2

DD

8.28*

8.41*

15.98***

15.9724

Hypothetical protein

CPG2083

2

DD

29.01***

29.00***

31.16***

61.60344

hypothetical protein

CPG775

3

SD

14.05***

14.05***

12.37**

5.3171

Hypothetical protein

CPG2128

2

SD

17.79***

17.85***

19.27***

45.49562

Hypothetical protein

CPG869

3

SD, DD

17.45***

17.85***

17.31***

8.16665

  1. Note: SD, segmental; TD, Tandem; DD, Disperse; M1 vs. M2, LRT statistic for model M1 versus M2; M7 vs. M8, LRT for model M7 versus M8; * Significance with P < 0.05; ** Significance with P < 0.01; *** Significance with P < 0.001.