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Table 3 Statistics of the Myc and S1-Pri differentially expressed genes (DEGs)

From: 5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea

 

Myc 5′-SAGE

S1-Pri 5′-SAGE

No. of genes with detected expression

1911

2732

No. of differentially expressed genes (DEGs)a

324 (17.0%)

716 (26.2%)

No of DEGs

  

   with homolog identified in BLASTXb

157 (48.5%)

500 (69.8%)

   with >3-fold up-regulation

295 (91.0%)

538 (75.1%)

   with GO term

146 (45.1%)

530 (74.0%)

   with KEGG ortholog

56 (17.3%)

270 (37.7%)

   unique to fruiting body-forming

22 (6.8%)

30 (4.2%)

   basidiomycetesc

   unique to C. cinerea

41 (12.7%)

22 (3.1%)

No. of enriched protein domainsd

118

115

  1. a p<0.05 in Fisher’s exact test.
  2. b e<10-5 in BLASTX homology search.
  3. c Homologs identified in at least two fruiting body-forming basidiomycetes.
  4. d p<0.05 in Fisher’s exact test.