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Table 1 Nested-PCR primers

From: Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples

  

CSNK2B

LY6G5B

  

First Round

Second Round

First Round

Second Round

H.sapiens

F

HsCSNK2BE1f01

Hs-MamCSNK2BE1-2f01

HsLY6G5BE1f01

HsLY6G5BE1f02

CGTTCCCTGGAAGTAGCAA

GCTGACGTGAAGATGAGCAG

GAGCATGGTCACAGGAAGGT

CATCTCCCCAGAATTCCAAA

R

Hs-SsCSNK2BE7r02

Hs-Mam-RnCSNK2BE7r01

HsLY6G5BE3r02

Hs-MamLY6G5BE3r01

CCCACCACAATAACGACTCC

TCAGCGAATCGTCTTGACTG

CGGAGGCCTAAGAAATCACA

TGTTTTCAGAGAGGGCAGTG

M.mulata

F

MamCsnk2bE1iso1f01

Hs-MamCsnk2bE1-2f01

MamLy6g5bE1f01

MamLy6g5bE1f02

ACCCTCCCCAATTTCCACT

GCTGACGTGAAGATGAGCAG

TCACAGGAAGGTGGGGTTT

CGTCTCCCCAGAATTCCATA

R

Mam-BtCsnk2bE7r02

Hs-Mam-RnCsnk2bE7r01

MamLy6g5bE3r02

Hs-MamLy6g5bE3r01

TCCCACCACAATAATGACTCC

TCAGCGAATCGTCTTGACTG

CAACAGAGGGAGGCCTAAGA

TGTTTTCAGAGAGGGCAGTG

S.scrofa

F

SsCsnk2bE1f01

SsCsnk2bE1-2f01

SsLy6g5bE1f01

SsLy6g5bE1f02

TCCTTGGAAGCAGAAACTCC

CGCTGAAGTGAAGATGAGCA

CTCAGGGATCACCCCTCTC

TCACGTGCTCGTAGGTATGC

R

Hs-SsCsnk2bE7r02

SsCsnk2bE7r01

SsLy6g5bE3r02

SsLy6g5bE3r01

CCCACCACAATAACGACTCC

GGGAATCAGCGAATTGTCTT

GAATGCTGGGGTCTTAGGG

CCGGGAAGGATGAGATGTTA

B.taurus

F

BtCsnk2bE1f01

BtCsnk2bE1-2f01

BtLy6g5bE1f01

BtLy6g5bE1f02

GAAGCAGAAACTCCCCTTCC

CCGACGTGAAGATGAGCAG

GTCAGAACCACCCTGCAGTT

CTCTCCCCAGAAGTCCATGA

R

Mam-BtCsnk2bE7r02

BtCsnk2bE7r01

BtLy6g5bE3r02

BtLy6g5bE3r01

TCCCACCACAATAATGACTCC

GGAATCAGCGAATCGTCTTC

GGGGTGTCAGGAGTGAGATG

AATCTATCTGCGACGGGAAA

R.norvegicus

F

Rn-MumCsnk2bE1f01

Rn-MumCsnk2bE1-2f01

RnLy6g5bBE1f01

RnLy6g5bE1f02

GTTCCTTGGAAGCACAGCTC

CCGCGGACATAAAGATGAGT

AGTGTGATCCCAGGAAGGTG

CTACTCCACGGGAGTTGCTC

R

RnCsnk2bE7r02

Hs-Mam-RnCsnk2bE7r01

RnLy6g5bE3r02

RnLy6g5bE3r01

GTGTCACAGGCAGAGGAGGT

TCAGCGAATCGTCTTGACTG

CCATGGAGAGCAGAAGGAAG

CAGAGCAGAATCTGGGAAGG

M.musculus

F

Rn-MumCsnk2bE1f01

Rn-MumCsnk2bE1-2f01

MumLy6g5bE1f01

MumLy6g5bE1f02

GTTCCTTGGAAGCACAGCTC

CCGCGGACATAAAGATGAGT

ACTGCCTGTCAAACCCATTC

TCCCCCAAATTCCATAATGA

R

MumCsnk2bE7r02

MumCsnk2bE7r01

MumLy6g5bE3r02

MumLy6g5bE3r01

AGCAGAGGAATGGTGGTGTC

GTGGGCAATCAGCGAATAGT

GAGTGTTCACAGACCGCAGA

GGGGAACACATCAGGGTCTA

  1. Name and sequence (5’-3’ orientation). F, forward primer; R, reverse primer.