Table 1 General features of the Sii CJ18 genome and other sequenced genomes of streptococci
| Â | S. infantariussubsp. infantarius | S. gallolyticussubsp. gallolyticus | S. gallolyticussubsp. macedonicus | S. gallolyticussubsp. pasteurianusATCC 43144 | S. agalactiae2603Â V/R | S. pyogenesM1 GAS | S. pneumoniaeD39 | S. thermophilus | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | CJ18 | ATCC BAA-102T | ATCC 43143 | ATCC BAA-2069 | UCN34 | ACA-DC 198 | LMD-9 | CNRZ 1066 | LMG 18311 | ||||
length (bp) | 1,988,420 + 19,829 pSICJ18-1 | 1,938,634 | 2,362,241 | 2,356,444 | 2,350,911 | 2,130,034 + 12,728 pSMA198 | 2,100,077 | 2,160,267 | 1,852,441 | 2,046,115 | 1,856,368 | 1,796,226 | 1,796,846 |
G + C (mol%) | 37.6 | 37.6 | 37.5 | 37.6 | 37.6 | 37.6 | 37.4 | 35.6 | 38.5 | 39.7 | 39.1 | 39.1 | 39.1 |
genes | 2050 + 35 pSICJ18-1 | 1988 | 2371 | 2410 + 21 pSGG1 | 2349 | 2280 + 17 pSMA198 | 2102 | 2276 | 1810 | 2069 | 2002 + 4 Plsm1 + 2 Plsm 2 | 2000 | 1973 |
pseudogenes/truncated proteins (%)b) | 97 (4.9%) | n/a a) | 49 (2.1%) | 0 | 37 (1.6%) | 215 (9.8%) | 157 (7.9%) | 0 | 35 (2.0%) | 82 (4.1%) | 206 (10.8%) | ~19% | ~19% |
protein (non tRNA/rRNA) | 1867 | Â | 2246 | 2309 | 2223 | 1977 | 1869 | 2124 | 1696 | 1914 | 1709 | 1915 | 1888 |
tRNA genes | 68 | 46c) | 60 | 80 | 71 | 70 | 61 | 80 | 60 | 58 | 67 | 67 | 67 |
rRNA genes | 18 | 8c) | 15 | 21 | 18 | 17 | 15 | 21 | 18 | 12 | 19 | 18 | 18 |
source | fermented camel milk suusac[31] | baby feces (HMP) | human clinical specimen, blood [32] | human clinical specimen, blood [33] | human clinical specimen, blood [13] | Greek Kasseri cheese [30] | human clinical specimen, blood [32] | human clinical specimen [34] | human clinical specimen [35] | human clinical specimen [36] | yogurt [27] | yogurt [26] | yogurt [26] |