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Table 2 GenBank accession numbers and reference sequence numbers of strains used in this study

From: Comparative genome analysis of Streptococcus infantarius subsp. infantariusCJ18, an African fermented camel milk isolate with adaptations to dairy environment

Species Strain Source Genbank accession or reference sequence number Reference
artificial antibiotic resistance genome various gene sequences of published antibiotic resistance genes none [37]
Lactococcus lactis subsp. cremoris MG1363 international prototype for LAB genetics; plasmid-free descendant of NCDO712, a cheese starter [GenBank:NC_009004] [38]
S. agalactiae 2603 V/R human clinical specimen [GenBank:NC_004116] [34]
S. agalactiae NEM316 human clinical specimen [GenBank:NC_004368] [39]
S. anginosus 1_2_62CV human clinical specimen [GenBank:NZ_ADME00000000] HMP a)
S. bovis ATCC 700338 human clinical specimen, synovial fluid from knee [GenBank:NZ_AEEL00000000] HMP a)
S. dysgalactiae subsp. equisimilis GGS_124 human clinical specimen [GenBank:AP010935] [40]
S. equi subsp. equi 4047 horse clinical specimen [GenBank:FM204883] [41]
S. equi subsp. zooepidemicus MGCS10565 human clinical specimen [GenBank:CP001129] [42]
S. equinus ATCC 9812 human clinical specimen, gut [GenBank: AEVB00000000] HMPa)
S. gallolyticus subsp. gallolyticus ATCC 43143 human clinical specimen, blood [GenBank:AP012053] [32]
S. gallolyticus subsp. gallolyticus ATCC BAA-2069 human clinical specimen, blood [GenBank:FR824043] [33]
S. gallolyticus subsp. gallolyticus UCN34 human clinical specimen, blood [GenBank:FN597254] [13]
S. gallolyticus subsp. gallolyticus TX20005 human clinical specimen, heart [GenBank:NZ_AEEM00000000] HMP a)
S. gallolyticus subsp. macedonicus (=S. macedonicus) ACA-DC 198 Greek kasseri cheese, dairy isolate [GenBank:HE613569] (genome) and [GenBank:HE613570] (plasmid pSMA198) [30, 43, 44]
S. gallolyticus subsp. pasteurianus ATCC 43144 human clinical specimen, blood [GenBank:AP012054] [32]
S. infantarius subsp. infantarius ATCC BAA-102T (isogenetic strain of CCUG 43820T) human infant, feces [GenBank: ABJK00000000] HMP a)
S. infantarius subsp. infantarius CJ18 fermented camel milk suusac [GenBank:CP003295] (genome) and [GenBank:CP003296] (plasmid pSICJ18-1) this study and [2, 7, 31]
S. infantarius subsp. infantarius LP90 dairy origin [GenBank:HM008642] none
S. mitis B6 hospital isolate Germany [GenBank:NC_013853] [45]
S. pneumoniae D39 (=NCTC 7466) virulent human clinical isolate [GenBank:NC_008533] [36]
S. pneumoniae R6 (=ATCC BAA-255) unencapsulated, parent strain R36A derived from D39 [GenBank:NC_003098] [46]
S. pneumoniae TIGR4 human clinical isolate [GenBank:NC_003028] [47]
S. pyogenes M1 GAS (=SF370) human clinical isolate [GenBank:NC_002737] [35]
S. salivarius ATCC 25975 human saliva [GenBank:AF389474] [48]
S. sanguinis SK36 human dental plaque [GenBank:NC_009009] [49]
S. thermophilus CNRZ1066 yogurt [GenBank:NC_006449] [26]
S. thermophilus LMG18311 yogurt [GenBank:NC_006448] [26]
S. thermophilus LMD-9 (=ATCC BAA-491) yogurt [GenBank:NC_008532] [27]
  1. a)HMP Human microbiome project http://www.hmpdacc.org.