From: The genome and transcriptome of perennial ryegrass mitochondria
Name of the genea | Sizeb(bp) | Position in the genome | Strandc | No. of amino acids | ||
---|---|---|---|---|---|---|
From | To | |||||
A. Protein and rRNA-coding genes | ||||||
1. Complex I genes | Â | Â | Â | Â | Â | |
nad1 | 978 | - | - | x | 325 | |
  nad1a | 387 | 284,188 | 284,574 | + | 129 | |
  nad1b | 81 | 247,595 | 247,675 | - | 27 | |
  nad1c | 192 | 245,995 | 246,186 | - | 64 | |
  nad1d | 60 | 512,368 | 512,427 | - | 20 | |
  nad1e | 258 | 76,540 | 76,797 | - | 85 | |
nad2 | 1,467 | - | - | x | 488 | |
  nad2a | 153 | 324,853 | 325,005 | - | 51 | |
  nad2b | 396 | 323,224 | 323,619 | - | 132 | |
  nad2c | 159 | 588,650 | 588,809 | + | 53 | |
  nad2d | 573 | 591,214 | 591,786 | + | 191 | |
  nad2e | 186 | 593,194 | 593,381 | + | 61 | |
nad3 | 357 | 137,432 | 137,788 | - | 118 | |
nad4 | 1,488 | - | - | + | 495 | |
  nad4a | 461 | 43,953 | 44,413 | + | 153 | |
  nad4b | 515 | 45,442 | 45,956 | + | 172 | |
  nad4c | 423 | 48,576 | 48,998 | + | 141 | |
  nad4d | 89 | 51,790 | 51,878 | + | 29 | |
nad4L | 315 | 263,099 | 263,413 | + | 104 | |
nad5 | 2,013 | - | - | - | 670 | |
  nad5a | 228 | 637,049 | 637,277 | - | 76 | |
  nad5b | 1,218 | 634,967 | 636,186 | - | 406 | |
  nad5c | 21 | 76,157 | 76,177 | - | 7 | |
  nad5d | 396 | 237,378 | 237,773 | - | 132 | |
  nad5e | 150 | 236,297 | 236,446 | - | 49 | |
nad6 | 945 | 510,437 | 511,381 | - | 314 | |
nad7-1 | 1,185 | - | - | + | 394 | |
  nad7-1a | 143 | 213,945 | 214,087 | + | 47 | |
  nad7-1b | 69 | 214,890 | 214,958 | + | 23 | |
  nad7-1c | 467 | 216,269 | 216,735 | + | 155 | |
  nad7-1d | 244 | 217,735 | 217,978 | + | 81 | |
  nad7-1e | 262 | 219,684 | 219,945 | + | 86 | |
nad7-2 | 1,185 | - | - | - | 394 | |
  nad7-2a | 143 | 449,072 | 449,214 | - | 47 | |
  nad7-2b | 69 | 448,201 | 448,269 | - | 23 | |
  nad7-2c | 467 | 446,424 | 446,890 | - | 155 | |
  nad7-2d | 244 | 445,181 | 445,424 | - | 81 | |
  nad7-2e | 262 | 443,214 | 443,475 | - | 86 | |
nad9 | 573 | 669,561 | 670,133 | + | 190 | |
2. Complex III gene | Â | Â | Â | Â | Â | |
cob | 1,194 | 232,540 | 233,733 | + | 397 | |
3. Complex IV genes | Â | Â | Â | Â | Â | |
cox1 | 1,989 | 1 | 1,989 | + | 662 | |
cox2 | 783 | - | - | + | 260 | |
  cox2a | 388 | 484,835 | 485,222 | + | 130 | |
  cox2b | 395 | 486,506 | 486,897 | + | 130 | |
cox3 | 843 | 670,403 | 671,245 | + | 280 | |
4. Complex V genes | Â | Â | Â | Â | Â | |
atp1 | 1,530 | 312,019 | 313,548 | - | 509 | |
atp4 | 588 | 335,648 | 336,235 | + | 195 | |
atp6 | 714 | 415,086 | 415,799 | + | 237 | |
atp8 | 468 | 292,308 | 292,775 | + | 155 | |
atp9 | 225 | 35,605 | 35,829 | + | 74 | |
5. Cytochrome c | Â | Â | Â | Â | Â | |
biogenesis genes | Â | Â | Â | Â | Â | |
ccmB | 651 | 132,035 | 132,685 | - | 216 | |
ccmC | 723 | 549,113 | 549,835 | - | 240 | |
ccmFN | 1,770 | 83,571 | 85,340 | - | 589 | |
ccmFC | 1,434 | - | - | + | 477 | |
  ccmFCa | 755 | 519,648 | 520,402 | + | 252 | |
  ccmFCb | 679 | 521,399 | 522,077 | + | 225 | |
6. Ribosomal proteins | Â | Â | Â | Â | Â | |
genes | Â | Â | Â | Â | Â | |
rps1 | 636 | 82,801 | 83,436 | - | 211 | |
rps2 | 1,464 | 575,833 | 577,296 | + | 487 | |
rps3 | 1,650 | - | - | + | 549 | |
  rps3a | 72 | 228,586 | 228,657 | + | 24 | |
  rps3b | 1,578 | 229,590 | 231,167 | + | 525 | |
rps4 | 1,035 | 93,583 | 94,617 | - | 344 | |
rps4-p | 1,032 | 603,531 | 604,562 | + | 343 | |
rps7-1 | 447 | 177,808 | 178,254 | - | 148 | |
rps7-2 | 447 | 380,279 | 380,725 | + | 148 | |
rps12 | 378 | 137,010 | 137,387 | - | 125 | |
rps13 | 351 | 248,209 | 248,559 | - | 116 | |
rps14-1 | 159 | 190,863 | 191,021 | + | 52 | |
rps14-2 | 159 | 472,138 | 472,296 | - | 52 | |
rpl5-1 | 552 | 190,178 | 190,729 | + | 183 | |
rpl5-2 | 552 | 472,430 | 472,981 | - | 183 | |
rpl16 | 558 | 231,058 | 231,615 | + | 185 | |
7. Other protein coding genes | Â | Â | Â | Â | Â | |
matR | 1,977 | 77,314 | 79,290 | - | 658 | |
mttB | 816 | 604,582 | 605,397 | + | 271 | |
8. rRNA genes | Â | Â | Â | Â | Â | |
rrn5-1 | 122 | 500,941 | 501,062 | + | - | |
rrn5-2 | 122 | 568,955 | 569,076 | + | - | |
rrn18-1 | 1,966 | 498,862 | 500,827 | + | - | |
rrn18-2 | 1,966 | 566,875 | 568,841 | + | - | |
rrn26-1 | 3,461 | 115,757 | 119,217 | - | - | |
rrn26-2 | 3,457 | 348,904 | 352,360 | + | - | |
Name of the gene a | Size b (bp) | Position in the genome | Strand b | tRNA type | Anti-codon | |
From | To | |||||
B. tRNA-coding genes | ||||||
trnN | 72 | 616,184 | 616,255 | - | Asn | GTT |
trnD-1 | 74 | 129,749 | 129,822 | - | Asp | GTC |
trnD-2 | 74 | 338,298 | 338,371 | + | Asp | GTC |
trnD-3 | 74 | 615,471 | 615,544 | + | Asp | GTC |
trnC-1 | 71 | 221,721 | 221,791 | - | Cys | GCA |
trnC-2 | 71 | 441,367 | 441,437 | + | Cys | GCA |
trnQ-1 | 72 | 151,087 | 151,158 | + | Gln | TTG |
trnQ-2 | 72 | 185,132 | 185,203 | + | Gln | TTG |
trnQ-3 | 72 | 407,374 | 407,445 | - | Gln | TTG |
trnQ-4 | 72 | 477,956 | 478,027 | - | Gln | TTG |
trnE | 73 | 649,329 | 649,401 | + | Glu | TTC |
trnH | 74 | 304,917 | 304,990 | + | His | GTG |
trnL | 71 | - | - | - | Leu | CAA |
  trnLa | 37 | 549,042 | 549,076 | - |  |  |
  trnLb | 34 | 548,992 | 549,029 | - |  |  |
trnK-1 | 73 | 174,964 | 175,036 | - | Lys | TTT |
trnK-2 | 73 | 383,497 | 383,569 | + | Lys | TTT |
trnfM | 74 | 11,905 | 11,978 | - | Met | CAT |
trnM-1 | 74 | 615,054 | 615,127 | - | Met | CAT |
trnM-2 | 73 | 630,497 | 630,569 | + | Met | CAT |
trnF | 73 | 371,486 | 371,558 | - | Phe | GAA |
trnP-1 | 74 | 172,177 | 172,250 | - | Pro | TGG |
trnP-2 | 75 | 282,933 | 283,007 | + | Pro | TGG |
trnP-3 | 74 | 386,282 | 386,355 | + | Pro | TGG |
trnS-1 | 88 | 138,301 | 138,388 | - | Ser | GCT |
trnS-2 | 86 | 379,430 | 379,515 | + | Ser | TGA |
trnW-1 | 74 | 171,961 | 172,034 | - | Trp | CCA |
trnW-2 | 74 | 386,498 | 386,571 | + | Trp | CCA |
trnY | 83 | 587,933 | 588,015 | + | Tyr | GTA |
trnF-p | 73 | 262,935 | 263,007 | + | Phe | GAA |