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Table 2 Annotation of de novo assemblies

From: Genome sequencing of bacteria: sequencing, de novoassembly and rapid analysis using open source tools

   

IMG-ER

PGAAP

RAST

Strain

     

SK2

Total COGs

 

2050

2111

2113

 

Missing COGs

 

116

82

80

 

Proportion of missing COGs

 

8.1

5.8

5.6

 

Predicted genome size, Mbs

3.4

   

209

Total COGs

 

1383

1449

1476

 

Missing COGs

 

116

80

66

 

Proportion of missing COGs

 

10.5

7.3

6.0

 

Predicted genome size, Mbs

2.4

   

C103-3

Total COGs

 

2123

2212

2256

 

Missing COGs

 

203

154

142

 

Proportion of missing COGs

 

14.8

11.3

10.4

 

Predicted genome size; Mbs

4.2

   

320

Total COGs

 

2964

3079

3072

 

Missing COGs

 

132

95

97

 

Proportion of missing COGs

 

7.9

5.7

5.8

 

Predicted genome size, Mbs

4.8

   
  1. SK2 – Alcanivorax borkumensis SK2; 209 – Flavobacterium sp. GOBB3-209; C103-3 – Flavobacterium sp. GOBB3-C103-3; 320 – Marinomonas sp. GOBB3-320. Genome size is given as Newbler default prediction. Missing COGs are COGs that are absent from the annotation compared to NC_008260 annotation in GenBank.
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BMC Genomics

ISSN: 1471-2164

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