Table 2 cDNA sequences obtained from NF (non-fruited-leaves in July) and their homologous GenBank records
cDNA | GenBank Accn No** | Size (nt) | GenBank record(s) with informing similarity | E - Value | Primer pairs used in qRT-PCR (All sequences are presented from 5’ to 3’. F: Forward, R: Reverse) |
|---|---|---|---|---|---|
JNF1* | GW574243 | 300 | No signifcant match in any databank | - | F: AACTGACACAATTGCAAAGAGG |
R: CACAGTCATTAATTAACAACCAAAGAA | |||||
JNF32* JNF87* | GW574244 | 1900 | No signifcant match in any databank | - | F: TCACTTCAATATACATGAAACAAAATCTC |
R: AGATAACCAAGAAAAAGAAAGAAGGAG | |||||
JNF31 JNF48 JNF84 | GW574245 | 1850 800 1830 | Nicotiana tabacum cytochrome P450 monooxygenase (CYP72A56) mRNA (gi85068677) | 6e-36 8e-33 5e-43 | F: TTCTCGTTTGAGATTTCACCTACTTAT |
R: AGAGAGAATGCATAACAACATACGATA | |||||
JNF42* JNF82* | GW574246 | 1000 | Lycopersicon esculentum ethylene responsive protein (ER6) (gi5669653) | 1e-92 | F: TGCTCTTCAAATTTGCTCTAATAAAA |
R: TTTGAACAATAGTTGCTAACACTTCC | |||||
JNF2 JNF62 | GW574247 | 900 | Lycopersicon esculentum wound/stress protein (gi51457947) | 1e-56 | F:AGTGTACCCAGGTAAGTTTCACTGTAG |
R: CAAAGTCCAACAACTCTACATTACAGA | |||||
JNF51 JNF55 | GW574248 | 1210 1290 | A gene complex of multiple tRNA genes and Photo System II binding proteins (see Accn gi170785617 at NCBI) | 0.0 | F: CTTGAAATCCAATTCTAAAAGATCAAA |
R: ATAATAGAGGAATGGGGGTAGAGTAGA | |||||
JNF56 JNF65 | GW574249 | 1120 1070 | Arabidopsis thaliana putative ribosomal protein L10 (At1g08360) (gi21386914) | 0.0 | F: CAAAAACTATGATCCACAGAAGGATA |
R: CTTAACCAGTTTCTTGTTTTTGTTCA | |||||
JNF4 | GW574250 | 1000 | Zea mays disease resistance response protein (gi100284658) | 0.0 | F: GGACATGTTGTTTTGGAATATACTCTT |
R: CATAACAACCTAAAGATGAAAAGAACC | |||||
JNF79* | GW574251 | 3000 | C.roseus cpr mRNA for NADPH ferrihemoprotein reductase (gi18138) | 0.0 | F: TCAAACTTCCTGCTGATTCTAAAGT |
R: AAAGTTGTTCAACTCATCCTCGTAG | |||||
JNF83* | GW574252 | 900 | Populus trichocarpa, unknown mRNA (gi18485578) | 3e-25 | F: GCGTAGTGACTAATCCTTGTCTACC |
R: AAGTTGGTAAAAGACAAATTTCAACAT | |||||
JNF92 | GW574253 | 1600 | Solanum phureja DnaJ-like protein isoform (gi113374277) | 1e-43 | F: TGATTGAGATCAAACAAGCATACAG |
R: ATGTCTAAATCGTACAACGCTCTCTT | |||||
JNF96* | GW574254 | 1000 | Arabidopsis thaliana ATHX (THIOREDOXIN X) mRNA (gi45336578) | 1e-36 | F: TTGAAAAATACAAGGTATATGGATTGC |
R: TCTAAGTAACAGACACAGACCTCAGAA |