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Table 4 cDNA sequences obtained from NN (non-fruited leaves in November) and their homologous GenBank records

From: Isolation and expression analysis of cDNAs that are associated with alternate bearing in Olea europaeaL. cv. Ayvalık

cDNA

GenBan Accn No**

Size (nt)

GenBank record(s) with informing similarity

E - Value

Primer pairs used in qRT-PCR (All sequences are presented from 5’ to 3’. F: Forward, R: Reverse)

NNF14* NNF36* NNF85*

GW574267

1430 1360 1410

Arabidopsis thaliana zinc finger family protein (At2g31770), IBR domain -containing protein (gi91806300)

0.0

F: CAGGAATCAAAAGAAAATATTCTGAAC

     

R: TCGACTCATAGACAAACTATGTACAGG

NNF22*

GW574269

1100

Vitis vinifera hypothetical protein mRNA (gi225450142)

2e-22

F: CAAATCTCTTCATCTTCTTCAATTCTG

     

R: CAGTATAAAAACTTGATTCCCTCCATA

NNF23*

GW574270

1000

Lycopersicon esculentum temperature - induced lipocalin mRNA (gi77744858)

0.0

F: ATATAAGTCTGATCCCAATAGTGACGA

     

R: TTCTGTACAAGCATGTAGTGTATCTCC

NNF24*

GW574271

1200

Nicotiana tabacum eIF4E (initiaition factor) mRNA (gi51599168)

1e-63

F: GAATGTCAGATTAAGGCAGGATAAA

     

R: AGCTTCTTAGCATCCTCATGAAATA

NNF29*

GW574272

1670

Arabidopsis thaliana transducin family protein (At2g26490) mRNA (gi42569344)

1e-74

F: GGTTGTGTATAGTGGGAGTCTTGATA

     

R: ACTTTGATTTGATCAATACTTTGCTG

NNF31

GW574273

800

Plantago major cold stress-induced protein (src1 gene) mRNA (gi53748474)

7e-27

F: AAAAAGAAGAAAGACAAGAAAAAGCAT

     

R: ATACACAATCAAAGAGTAGCCAACAAC

   

Retama raetam drought-induced protein (DIP) mRNA (gi16198345)

1e-24

 

NNF32

GW574274

600

Multiple tRNA genes and PSII binding proteins (see Accn gi170785617)

0.0

F: CTTGAAATCCAATTCTAAAAGATCAAA

     

R: ATAATAGAGGAATGGGGGTAGAGTAGA

NNF59*

GW574275

800

Arabidopsis thaliana PSRP4 (Plastid specific-ribosomal protein 4) mRNA (gi145360741)

3e-39

F: ATTCTCTCACATCAATCTCATCTCC

     

R: GTCCTCTTCCCTTATTCTTGTCCT

NNF91*

GW574268

660

Arabidopsis thaliana pre-mRNA splicing factor (At4g14342) mRNA (gi145361320)

4e-56

F: TTCTATCGGGTGTATAATTTGATCTTT

     

R: TTATTAACCAAGTGGGTACAGATTCTT

  1. * cDNAs that are new for olive.
  2. ** Obtained from GenBank for the sequences generated through this study.